Browse Element(s) Details


Os.44473.1.S1_at

Description gb:NM_186340.1
DB_XREF= gi:34899765
GEN=OJ1773_H01.6
TID=Os.44473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44473 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative leucine-rich repeat transmembrane protein kinase (OJ1773_H01.6), mRNA.
PROD=putative leucine-rich repeat transmembraneprotein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g378108/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37760Os.53924.1.S1_at11/117+22646672..22652656lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os07g37770Os.12042.1.S1_at8/117+22652964..2265489440S ribosomal protein S11, putative, expressed
LOC_Os07g37780Os.12042.1.S1_at9/117+22655551..2265748040S ribosomal protein S11, putative, expressed
LOC_Os07g37790Os.31773.2.S1_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37790Os.31773.2.S1_x_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed
LOC_Os07g37820OsAffx.16601.1.S1_at11/117+22683081..22684020hypothetical protein
LOC_Os07g37830Os.44471.1.S1_a_at11/117+22687206..22691594Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
LOC_Os07g37840Os.44471.2.S1_at11/117+22691463..22692770hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g37850Os.6417.1.S1_at11/117+22694263..22695016expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44473.1.S1_at--447--611Chr07:22670863..22670887 (25 bp)
ATGCGCACCTTGTTCCATTATGAAG
LOC_Os07g37810
Os.44473.1.S1_at--961--8791Chr07:22670772..22670796 (25 bp)
TGTTGGAACTTCTTACAGGGCGTAA
LOC_Os07g37810
Os.44473.1.S1_at--560--2631Chr07:22670642..22670772 (25 bp)
AACCTTATGACAGTTCACGTCCACG
LOC_Os07g37810
Os.44473.1.S1_at--978--2051Chr07:22670589..22670613 (25 bp)
ACTTCCCAGCTTTACGATATCGATG
LOC_Os07g37810
Os.44473.1.S1_at--661--7851Chr07:22670551..22670575 (25 bp)
GGTAGATCCCTCTATTCGAGGCCAA
LOC_Os07g37810
Os.44473.1.S1_at--963--891Chr07:22670516..22670540 (25 bp)
AGGCGTTGTCGCGTTTTGTTGACAT
LOC_Os07g37810
Os.44473.1.S1_at--533--6811Chr07:22670392..22670416 (25 bp)
GTTTAGGCCCTCAATGTCTGAAGTT
LOC_Os07g37810
Os.44473.1.S1_at--425--7271Chr07:22670371..22670391 (21 bp)
GTCCAAGATTTAACTCGCATGCATG
LOC_Os07g37810
Os.44473.1.S1_at--336--71Chr07:22669700..22669724 (25 bp)
ATTGCACATCTTATCTGCTCTGTTA
NONE
Os.44473.1.S1_at--625--5011Chr07:22669593..22669617 (25 bp)
GCAGTGGTTCTCCTCTGAAATTTCA
NONE
Os.44473.1.S1_at--206--10331Chr07:22669563..22669587 (25 bp)
TTTCATCCATGCGAAAACCGCCGTA
NONE
Target Sequence 
ATGCGCACCTTGTTCCATTATGAAGCCCCCGAAGTGCATGAATCTGGATTATTAAGTGATCGAAGTGATGTTTACAGCTT
TGGAGTTGTCATGTTGGAACTTCTTACAGGGCGTAAACCTTATGACAGTTCACGTCCACGTGCTGAGCAACACCTGGTGC
GGTGGGCCACTTCCCAGCTTTACGATATCGATGCTATATCAAAGATGGTAGATCCCTCTATTCGAGGCCAATGTTCTGAA
AAGGCGTTGTCGCGTTTTGTTGACATTATCAGCAGTTGTATTCAGCATGAGCCAGAGTTTAGGCCCTCAATGTCTGAAGT
TGTCCAAGATTTAACTCGCATGCATGAGAAAGGTTTGCTTTGCATTGCACATCTTATCTGCTCTGTTAGCACCGGGGAAT
ACACCAGGGTTCATAAAACTGATGAAATACAATCGGATTTTGTGAAAAACCGACGTTTCAACGTGGCTCCGCAGTGGTTC
TCCTCTGAAATTTCAATGGGTTTCATCCATGCGAAAACCGCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis