Browse Element(s) Details


Os.44471.2.S1_at

Description gb:AK112115.1
DB_XREF= gi:37988778
TID=Os.44471.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.44471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lysophospholipase isolog (OJ1773_H01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E06, full insert sequence.
FL= gb:AK112115.1 gb:AK111937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3784011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed
LOC_Os07g37820OsAffx.16601.1.S1_at11/117+22683081..22684020hypothetical protein
LOC_Os07g37830Os.44471.1.S1_a_at11/117+22687206..22691594Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
LOC_Os07g37840Os.44471.2.S1_at11/117+22691463..22692770hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g37850Os.6417.1.S1_at11/117+22694263..22695016expressed protein
LOC_Os07g37860OsAffx.20387.1.S1_x_at1/117+22702460..22708298retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g37870Os.53479.1.S1_x_at2/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.31069.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870Os.25754.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.17106.1.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37880NANA7+22716434..22716655hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44471.2.S1_at--260--1131Chr07:22692015..22692039 (25 bp)
AGTCCGTCAAGGTGCCGGCCAAGCG
LOC_Os07g37840
Os.44471.2.S1_at--63--2691Chr07:22691788..22691812 (25 bp)
AAGACCATCAAGATATACGACGGGA
LOC_Os07g37840
Os.44471.2.S1_at--1010--9931Chr07:22691773..22691797 (25 bp)
TACGACGGGATGATGCACTCCATGC
LOC_Os07g37840
Os.44471.2.S1_at--958--6291Chr07:22691765..22691789 (25 bp)
GATGATGCACTCCATGCTCTTCGGG
LOC_Os07g37840
Os.44471.2.S1_at--575--1671Chr07:22691739..22691763 (25 bp)
AGCCTGACGAGAACATCGAGCGCGT
LOC_Os07g37840
Os.44471.2.S1_at--166--9351Chr07:22691700..22691724 (25 bp)
TCGCGTGGCTCAACGAGAGATGCAC
LOC_Os07g37840
Os.44471.2.S1_at--513--9711Chr07:22691691..22691715 (25 bp)
TCAACGAGAGATGCACGCCGAGGGA
LOC_Os07g37840
Os.44471.2.S1_at--90--6131Chr07:22691665..22691689 (25 bp)
GAGGGCAGCTTCCTGACAATACAAG
LOC_Os07g37840
Os.44471.2.S1_at--1039--4331Chr07:22691632..22691656 (25 bp)
CCAGGATTCACTCCACTCTATTCAG
LOC_Os07g37840
Os.44471.2.S1_at--311--7351Chr07:22691566..22691590 (25 bp)
GTGCAAATTTGCAGTGATTCTATAT
LOC_Os07g37840
Os.44471.2.S1_at--673--2551Chr07:22691495..22691519 (25 bp)
AACTGCTCAGTCAGGTTTACATGAT
LOC_Os07g37840
Target Sequence 
AGTCCGTCAAGGTGCCGGCCAAGCGCCTCATCGCCGCGCGCAACCCCATGCGCTATAGCGGCCGGCCGAGGCTCGGCACC
GTCGTCGAGCTGCTGCGCGCCACCGACGAGCTCGGCGCCCGCCTCGGCGAAGTCACCGTCCCGTTCCTCGTCGTGCACGG
CAGCGCCGACGAGGTGACCGACCCGGACATCAGCCGCGCGCTGTACGACGCCGCCGCCAGCAAGGACAAGACCATCAAGA
TATACGACGGGATGATGCACTCCATGCTCTTCGGGGAGCCTGACGAGAACATCGAGCGCGTCCGCGCTGACATTCTCGCG
TGGCTCAACGAGAGATGCACGCCGAGGGAGGAGGGCAGCTTCCTGACAATACAAGATTAGTATCCAGGATTCACTCCACT
CTATTCAGATTATTGTGAAGTAGCAAATGCACAAAAAGAATGATTAAATGTGCAAATTTGCAGTGATTCTATATATAAAT
TTGATGAACATTTGCAGTGATTCTATATATAAATTTGATGAACTGCTCAGTCAGGTTTACATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44471.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis