Browse Element(s) Details


Os.44471.1.S1_a_at

Description gb:AK071983.1
DB_XREF= gi:32982006
TID=Os.44471.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.44471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lysophospholipase isolog (OJ1773_H01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089O03, full insert sequence.
FL= gb:AK071983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3783011/11Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed
LOC_Os07g37820OsAffx.16601.1.S1_at11/117+22683081..22684020hypothetical protein
LOC_Os07g37830Os.44471.1.S1_a_at11/117+22687206..22691594Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
LOC_Os07g37840Os.44471.2.S1_at11/117+22691463..22692770hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g37850Os.6417.1.S1_at11/117+22694263..22695016expressed protein
LOC_Os07g37860OsAffx.20387.1.S1_x_at1/117+22702460..22708298retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g37870Os.53479.1.S1_x_at2/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.31069.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870Os.25754.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.17106.1.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37880NANA7+22716434..22716655hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44471.1.S1_a_at--345--2891Chr07:22690506..22690530 (25 bp)
AAGGTTACACTGTTCCATTAGAGGT
LOC_Os07g37830
Os.44471.1.S1_a_at--701--3591Chr07:22690521..22690545 (25 bp)
CATTAGAGGTCATGCCTGCTGGGCA
LOC_Os07g37830
Os.44471.1.S1_a_at--532--4251Chr07:22690535..22690559 (25 bp)
CCTGCTGGGCAGTTTGAACCGTTAT
LOC_Os07g37830
Os.44471.1.S1_a_at--1001--5431Chr07:22690550..22690574 (25 bp)
GAACCGTTATACAGAACTCCGCTAA
LOC_Os07g37830
Os.44471.1.S1_a_at--674--811Chr07:22690801..22690825 (25 bp)
ATGGAGAATTGCCAGTCCTTCCGAT
LOC_Os07g37830
Os.44471.1.S1_a_at--150--4311Chr07:22690817..22690841 (25 bp)
CCTTCCGATGTCTGTATATGGTGCC
LOC_Os07g37830
Os.44471.1.S1_a_at--736--271Chr07:22690832..22690856 (25 bp)
ATATGGTGCCGTTGCTATGGCCCAT
LOC_Os07g37830
Os.44471.1.S1_a_at--915--6311Chr07:22690869..22690893 (25 bp)
GATGAATACTCGTCACCAAGCCAAT
LOC_Os07g37830
Os.44471.1.S1_a_at--890--3151Chr07:22691350..22691374 (25 bp)
AATTCGTTCTGCCAAGCTTGTACAA
LOC_Os07g37830
Os.44471.1.S1_a_at--527--7851Chr07:22691375..22691399 (25 bp)
GGTAGAGAGCGCCTTGTACTGCCTC
LOC_Os07g37830
Os.44471.1.S1_a_at--1097--6451Chr07:22691421..22691445 (25 bp)
GATACAACGGCAAGCTTCGCAAACT
LOC_Os07g37830
Target Sequence 
AAGGTTACACTGTTCCATTAGAGGTCATGCCTGCTGGGCAGTTTGAACCGTTATACAGAACTCCGCTAAGTATTCAGGAT
GGAGAATTGCCAGTCCTTCCGATGTCTGTATATGGTGCCGTTGCTATGGCCCATAGTGTGGATTCTGATGAATACTCGTC
ACCAAGCCAATTCTTCTTCTATCTGTATGACAAGAGAAATTCTGGTTTAGGAGGAATATCTTTTGATGAAGGGCAATTCT
CAGTATTCGGGTATACCACAGATGGAAGAGAAGTTCTGTCGCAGATTAAAACTGGAGATATAATTCGTTCTGCCAAGCTT
GTACAAGGTAGAGAGCGCCTTGTACTGCCTCCAGAAGCGCCGGCAGAGAGCTGATACAACGGCAAGCTTCGCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44471.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis