Browse Element(s) Details


OsAffx.16601.1.S1_at

Description tigr:9635.m03759
TID=OsAffx.16601.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3782011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37790Os.31773.2.S1_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37790Os.31773.2.S1_x_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed
LOC_Os07g37820OsAffx.16601.1.S1_at11/117+22683081..22684020hypothetical protein
LOC_Os07g37830Os.44471.1.S1_a_at11/117+22687206..22691594Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
LOC_Os07g37840Os.44471.2.S1_at11/117+22691463..22692770hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g37850Os.6417.1.S1_at11/117+22694263..22695016expressed protein
LOC_Os07g37860OsAffx.20387.1.S1_x_at1/117+22702460..22708298retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16601.1.S1_at--102--7111Chr07:22683888..22683912 (25 bp)
GTCAGCGCGGTGTCGTTCGGGTTCG
LOC_Os07g37820
OsAffx.16601.1.S1_at--277--4211Chr07:22683222..22683652 (25 bp)
CCCCGAGGTGTACGGTCATTCTGAA
LOC_Os07g37820
OsAffx.16601.1.S1_at--458--7751Chr07:22683216..22683240 (25 bp)
GGTGTACGGTCATTCTGAAGAAATA
LOC_Os07g37820
OsAffx.16601.1.S1_at--732--5371Chr07:22683200..22683224 (25 bp)
GAAGAAATAGGTGTTGCAGCATTGT
LOC_Os07g37820
OsAffx.16601.1.S1_at--50--10751Chr07:22683187..22683211 (25 bp)
TTGCAGCATTGTTCCAAGACAACTC
LOC_Os07g37820
OsAffx.16601.1.S1_at--498--3591Chr07:22683163..22683187 (25 bp)
CATTAATTAGTTTGGACGGCGTGTC
LOC_Os07g37820
OsAffx.16601.1.S1_at--401--6871Chr07:22683154..22683178 (25 bp)
GTTTGGACGGCGTGTCTGATCACAA
LOC_Os07g37820
OsAffx.16601.1.S1_at--169--8371Chr07:22683146..22683170 (25 bp)
GGCGTGTCTGATCACAACAAGCCAT
LOC_Os07g37820
OsAffx.16601.1.S1_at--1145--7171Chr07:22683141..22683165 (25 bp)
GTCTGATCACAACAAGCCATATCCA
LOC_Os07g37820
OsAffx.16601.1.S1_at--1001--4431Chr07:22683126..22683150 (25 bp)
GCCATATCCATATGTCATGTACGAT
LOC_Os07g37820
OsAffx.16601.1.S1_at--384--8731Chr07:22683114..22683138 (25 bp)
TGTCATGTACGATGAGCCCGACCAG
LOC_Os07g37820
Target Sequence 
GTCAGCGCGGTGTCGTTCGGGTTCGTGGCCACCGCCATCCTCGTCTCCATGTTCCTCGCCATGGCCATCCTCGAGCACTT
CCTCCGCTCCCCGGCCCACCGCGGCCACGCTGGGATGGGGCCGCCGCCCCCGCACCCGCCGCCGCCGGGAGGGATCCTCT
CTCGCCTCCGCCTACTCCTCCACCGCCGCGGCGCCGGCGAGGCCGCCTTCCCTGGCGGCTCGGATCTCGAGGCGGCCAGG
AAGCTCGACGGCGGCGCGTCCCCCGAGGTGTACGGTCATTCTGAAGAAATAGGTGTTGCAGCATTGTTCCAAGACAACTC
ATTAATTAGTTTGGACGGCGTGTCTGATCACAACAAGCCATATCCATATGTCATGTACGATGAGCCCGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis