Browse Element(s) Details


Os.53948.1.S1_at

Description gb:AK100970.1
DB_XREF= gi:32986179
TID=Os.53948.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143B18, full insert sequence.
FL= gb:AK100970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2595011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein
LOC_Os09g25970OsAffx.30029.1.S1_at11/119+15596968..15597719hypothetical protein
LOC_Os09g25980OsAffx.6401.1.S1_at9/119+15598148..15605591Receptor family ligand binding region containing protein, expressed
LOC_Os09g25990OsAffx.30030.1.S1_x_at11/119+15609714..15615400Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53948.1.S1_at--705--10511Chr09:15584775..15584799 (25 bp)
TTCACTTTCTGATTGCTGGATGCAT
LOC_Os09g25950
Os.53948.1.S1_at--943--371Chr09:15584920..15584944 (25 bp)
ATCACTCTACGCTTCAGCAGATGAG
LOC_Os09g25950
Os.53948.1.S1_at--124--7071Chr09:15584957..15584981 (25 bp)
GTCAAGGAAGTGCTCTCCTGGGACA
LOC_Os09g25950
Os.53948.1.S1_at--222--8651Chr09:15584975..15584999 (25 bp)
TGGGACATCAGGTCGCTGTCTCAGC
LOC_Os09g25950
Os.53948.1.S1_at--116--9291Chr09:15585003..15585027 (25 bp)
TCCGTCCCCATGATGTGACCATAAA
LOC_Os09g25950
Os.53948.1.S1_at--245--6171Chr09:15585080..15585104 (25 bp)
GAGGATCGCCAATCCGTTGACCCGT
LOC_Os09g25950
Os.53948.1.S1_at--1079--7491Chr09:15585113..15585137 (25 bp)
GTGGTCTACCACCTTCATCTAGAAG
LOC_Os09g25950
Os.53948.1.S1_at--731--51Chr09:15585176..15585200 (25 bp)
ATTGTTGTTGAGAATGCAGCCCTTC
LOC_Os09g25950
Os.53948.1.S1_at--71--10571Chr09:15585198..15585222 (25 bp)
TTCTCTCCAGTGCTGTGAACCAACA
LOC_Os09g25950
Os.53948.1.S1_at--65--5351Chr09:15585214..15585238 (25 bp)
GAACCAACACCGGTACAGCTACTTA
LOC_Os09g25950
Os.53948.1.S1_at--588--7931Chr09:15585420..15585444 (25 bp)
GGATTCTCTAGCTTTTCTCATTTAA
LOC_Os09g25950
Target Sequence 
TTCACTTTCTGATTGCTGGATGCATGTAAAAAAGCAATCACTCTACGCTTCAGCAGATGAGTTTCAGGATCTTGTCAAGG
AAGTGCTCTCCTGGGACATCAGGTCGCTGTCTCAGCGGATCCGTCCCCATGATGTGACCATAAAAGATGTCACTGATAAT
GGCGGCAGCAAAATTGACAACGGTTGCAGCAACGATGAGGATCGCCAATCCGTTGACCCGTCCACTAGCGTGGTCTACCA
CCTTCATCTAGAAGGCATTGATGTGTCATACAGAATTGACCAAGATTCCAACATTGTTGTTGAGAATGCAGCCCTTCTCT
CCAGTGCTGTGAACCAACACCGGTACAGCTACTTAACATGGAGGGAAAAGGTAAGCATTTTGTAGGAGCATATATTAGAG
CTCATTATCTGAAAAACAAATAGAGCTCATGCAGTAAACTGTATGCATGAAAAAAATATATATTAGAGCTAATTACCATG
GAGTAAAGCTGTATGCAATCTTATGAAATTCTACTCTAAAATGTCATGAGGTCAATGGATTCTCTAGCTTTTCTCATTTA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis