Browse Element(s) Details


Os.53950.1.S1_at

Description gb:AK100983.1
DB_XREF= gi:32986192
TID=Os.53950.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145A15, full insert sequence.
FL= gb:AK100983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4885011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein
LOC_Os05g48850Os.53950.1.S1_at11/115+27919894..27921728no apical meristem, putative, expressed
LOC_Os05g48860Os.56989.1.S1_at11/115+27926242..27927335Guanylate-binding protein, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53950.1.S1_at--906--8611Chr05:27921272..27921296 (25 bp)
TGGTGAACAGCAACTACTCCATCGT
LOC_Os05g48850
Os.53950.1.S1_at--127--8631Chr05:27921318..27921342 (25 bp)
TGGTGGTAGCTTTCTCAAGGAGGCA
LOC_Os05g48850
Os.53950.1.S1_at--1037--8231Chr05:27921339..27921363 (25 bp)
GGCAAACGTTGTGCACGAGTTCTAC
LOC_Os05g48850
Os.53950.1.S1_at--801--8251Chr05:27921369..27921393 (25 bp)
GGCAGCAACGATGGGTTACCGGCCA
LOC_Os05g48850
Os.53950.1.S1_at--1134--7331Chr05:27921430..27921454 (25 bp)
GTGCACGCGGCAAGGAACAGCTTTG
LOC_Os05g48850
Os.53950.1.S1_at--52--2491Chr05:27921445..27921469 (25 bp)
AACAGCTTTGGTGGCCCTTGAAGGA
LOC_Os05g48850
Os.53950.1.S1_at--781--3651Chr05:27921546..27921570 (25 bp)
CTTAACCTTACATTCATCCATCAGT
LOC_Os05g48850
Os.53950.1.S1_at--335--10151Chr05:27921598..27921622 (25 bp)
TATCGTTTCCGATGCTATACTGTGC
LOC_Os05g48850
Os.53950.1.S1_at--956--1251Chr05:27921625..27921649 (25 bp)
AGATTATTACTACACGCCGTTCTAA
LOC_Os05g48850
Os.53950.1.S1_at--1000--6871Chr05:27921685..27921709 (25 bp)
GTATACATGCACACGGAAGAGGTCC
LOC_Os05g48850
Os.53950.1.S1_at--502--6151Chr05:27921703..27921727 (25 bp)
GAGGTCCTGATGATGCATCACTTCA
LOC_Os05g48850
Target Sequence 
TGGTGAACAGCAACTACTCCATCGTCCATGGCCATCAAGGTGGTGGTGGTGGTAGCTTTCTCAAGGAGGCAAACGTTGTG
CACGAGTTCTACGACCCGGCAGCAACGATGGGTTACCGGCCACCTGCTCCTGCTGCGCACTTCGCGCCAAACTTCGCGGT
GCACGCGGCAAGGAACAGCTTTGGTGGCCCTTGAAGGAAAAACCAAAATTACACAAAATCTAAACATTACCGTTTATACC
GATATGATTCACATAGGTGCCATTATATTACATTCTTAACCTTACATTCATCCATCAGTTATTTGCAGTTTTGTTCAAAG
TTGTTATATCGTTTCCGATGCTATACTGTGCAAAGATTATTACTACACGCCGTTCTAACTCGAAAATGTCAATTAATGTA
TCAGTTTGTACATGTATACATGCACACGGAAGAGGTCCTGATGATGCATCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis