Browse Element(s) Details


Os.53974.1.S1_at

Description gb:AK101109.1
DB_XREF= gi:32986318
TID=Os.53974.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025E11, full insert sequence.
FL= gb:AK101109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4277011/11U3 snoRNP-associated, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0005680cellular_componentanaphase-promoting complex
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53974.1.S1_at--963--531Chr03:23773133..23773157 (25 bp)
ATCCCGAAATCTGGACGCTTTATTG
LOC_Os03g42770
Os.53974.1.S1_at--1138--4111Chr03:23773118..23773142 (25 bp)
CGCTTTATTGTTGCTGGTGTGGGCC
LOC_Os03g42770
Os.53974.1.S1_at--1118--4411Chr03:23772468..23772491 (24 bp)
GCCAGGAGCCTCGTCTTGGAAGATG
LOC_Os03g42770
Os.53974.1.S1_at--769--8411Chr03:23772442..23772466 (25 bp)
GGCCGTGTCCGATCAGCTCAAAATG
LOC_Os03g42770
Os.53974.1.S1_at--540--10731Chr03:23772352..23772376 (25 bp)
TTGATGCCGAAAAACCCCTTAAATG
LOC_Os03g42770
Os.53974.1.S1_at--343--6191Chr03:23772248..23772272 (25 bp)
GAGGCTGAACGGGTTACCTTCACAA
LOC_Os03g42770
Os.53974.1.S1_at--725--7711Chr03:23772205..23772229 (25 bp)
GGGTGTTACAGACCATTTGAGCTGA
LOC_Os03g42770
Os.53974.1.S1_at--766--8171Chr03:23772157..23772181 (25 bp)
GGAAGTCCCGTCAGGCAATTTTGTA
LOC_Os03g42770
Os.53974.1.S1_at--1041--6951Chr03:23772135..23772159 (25 bp)
GTAGCATTGCTTCCTTAAGTTTAAA
LOC_Os03g42770
Os.53974.1.S1_at--232--3351Chr03:23771984..23772008 (25 bp)
CACGGGAGGATTTTGAGGCCCTGAA
LOC_Os03g42770
Os.53974.1.S1_at--949--6211Chr03:23771970..23771994 (25 bp)
GAGGCCCTGAACTATGTACCAATAC
LOC_Os03g42770
Target Sequence 
ATCCCGAAATCTGGACGCTTTATTGTTGCTGGTGTGGGCCAGGAGCCTCGTCTTGGAAGATGGGGCCGTGTCCGATCAGC
TCAAAATGGAGTTGTAATCCATCCAATCCGACTAAAAGAAGAGAGCGAGGACTTGTAGGGTAGTAGTAGATGGTTGATGC
CGAAAAACCCCTTAAATGTTGTTAAGTCACACAAAGGACAAATCCCTTCCNCCTTGCATTTTTTNGCAACCATTCCCACC
GATGAAATTCGATACAAGAGGCTGAACGGGTTACCTTCACAAGCAATGGGAATTTGGAGGGGGTGTTACAGACCATTTGA
GCTGAAGAATTGAGATGTATTCTGTAGAGGAAGTCCCGTCAGGCAATTTTGTAGCATTGCTTCCTTAAGTTTAAAGACAG
ATTTTTTTTATGTATCAAACAAGTAGGATAAGGCGGTTTTGAAAATTGGCCTTTGATTCAAAAATGCCTTGATCAATTGT
TCTNTACAATTGGAGTGGTTTATATCAGATAGAGAATTGCNCACGGGAGGATTTTGAGGCCCTGAACTATGTACCAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis