Browse Element(s) Details


Os.53998.1.S1_at

Description gb:AK101200.1
DB_XREF= gi:32986409
TID=Os.53998.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030L24, full insert sequence.
FL= gb:AK101200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0761011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07570Os.20276.1.S1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570Os.23670.1.A1_at11/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07570OsAffx.661.1.S1_x_at1/111+3627517..3635961Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g07579NANA1+3638973..3639226NA
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53998.1.S1_at--176--2511Chr01:3659722..3659746 (25 bp)
AACATGATTTGTCTTCCCATCTCTT
LOC_Os01g07610
Os.53998.1.S1_at--1034--3011Chr01:3659759..3659778 (20 bp)
AATGCTGTGCTGCAGCTGAGTGCTC
LOC_Os01g07610
Os.53998.1.S1_at--103--2091Chr01:3660376..3660400 (25 bp)
ACATTTCGCCGTTGCTATTGGCAGC
LOC_Os01g07610
Os.53998.1.S1_at--206--4031Chr01:3660400..3660424 (25 bp)
CGTCAGCTCAGATGTGGTGCAGGCA
LOC_Os01g07610
Os.53998.1.S1_at--198--1571Chr01:3660424..3660448 (25 bp)
AGCTAGTACTTACTGCTGCACGGTT
LOC_Os01g07610
Os.53998.1.S1_at--98--10691Chr01:3660447..3660471 (25 bp)
TTGAGTCCCCGTCACACAAAGTTTG
LOC_Os01g07610
Os.53998.1.S1_at--1017--2191Chr01:3660462..3660486 (25 bp)
ACAAAGTTTGGCACCATGTCTCTCT
LOC_Os01g07610
Os.53998.1.S1_at--326--771Chr01:3660477..3660501 (25 bp)
ATGTCTCTCTTTTAGCACAGTGCTA
LOC_Os01g07610
Os.53998.1.S1_at--840--51Chr01:3660548..3660764 (25 bp)
ATTGATGTGCAGCTTTGCTCACGCA
LOC_Os01g07610
Os.53998.1.S1_at--1093--3111Chr01:3660913..3660937 (25 bp)
AATTTTGCTTCTAGCACGTCGTTTG
LOC_Os01g07610
Os.53998.1.S1_at--615--10331Chr01:3660947..3660971 (25 bp)
TTTCACGGCTGTTATATACGCTTAA
LOC_Os01g07610
Target Sequence 
AACATGATTTGTCTTCCCATCTCTTCTACTCTATGAGAATGCTGTGCTGCAGCTGAGTGCTCATGCCGCCTGGTTCTCCA
AGCAAGAGGGCCAAGGAGGGGACGCCGATGTTGGAGCGTTGCCTCCCACATTTCGCCGTTGCTATTGGCAGCGTCAGCTC
AGATGTGGTGCAGGCAGCTAGTACTTACTGCTGCACGGTTGAGTCCCCGTCACACAAAGTTTGGCACCATGTCTCTCTTT
TAGCACAGTGCTACCAGCCAGCTCCGAGGTAGCAACAGCAACAGCATTTGCAGTGCCAGATTGATGTGCAGCTTTGCTCA
CGCAGGAGCAAGCAACCAAGAACGGGAGTACCGGAGCATGTGAGCTATGTCGTCGTCGACAGCGGCAGCGTGGCGCCGGG
CAAGATCGCCGGCGCCGCCGTCGCCAGCCGGAGCCGATAAATAACACAAGTACGCAGTACTACTACCTCACTAATTTTGC
TTCTAGCACGTCGTTTGCTCATTCCATTTCACGGCTGTTATATACGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis