Browse Element(s) Details


Os.54004.1.S1_at

Description gb:AK101226.1
DB_XREF= gi:32986435
TID=Os.54004.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031F08, full insert sequence.
FL= gb:AK101226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2280011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22750NANA12+12838213..12838922hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22760OsAffx.12861.4.S1_x_at9/1112+12840719..12843923hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_s_at11/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_x_at8/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.7664.1.S1_at6/1112+12845213..12847529hypothetical protein
LOC_Os12g22770OsAffx.10967.1.S1_x_at4/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.2.S1_at2/1112+12845213..12847529hypothetical protein
LOC_Os12g22770Os.8753.4.S1_x_at1/1112+12845213..12847529hypothetical protein
LOC_Os12g22780OsAffx.31835.1.S1_at11/1112+12850448..12851431hypothetical protein
LOC_Os12g22790NANA12+12860537..12860836hypothetical protein
LOC_Os12g22800Os.54004.1.S1_at11/1112+12861763..12863518expressed protein
LOC_Os12g22810Os.7279.1.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.2.S1_x_at11/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22810Os.7279.3.S1_at8/1112+12865555..12876253transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g22820NANA12+12882112..12883317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g22830NANA12+12883810..12886366retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54004.1.S1_at--132--6931Chr12:12862995..12863019 (25 bp)
GTAGGACTCAATTGCGTCGCCTGAA
LOC_Os12g22800
Os.54004.1.S1_at--1031--8291Chr12:12863044..12863068 (25 bp)
GGCTACGCATGGCAACATTGTTCAA
LOC_Os12g22800
Os.54004.1.S1_at--19--251Chr12:12863094..12863118 (25 bp)
ATATGTGGACCGATTGGCCTTTATT
LOC_Os12g22800
Os.54004.1.S1_at--414--5371Chr12:12863127..12863151 (25 bp)
GAAGACGTTTGTCCAGACTGCAGTC
LOC_Os12g22800
Os.54004.1.S1_at--526--1491Chr12:12863161..12863185 (25 bp)
AGCAACTGTTGCTTGCACCTAGTGA
LOC_Os12g22800
Os.54004.1.S1_at--883--391Chr12:12863296..12863320 (25 bp)
ATCAGCCGTGGTAGAACGCTCTCGA
LOC_Os12g22800
Os.54004.1.S1_at--803--4811Chr12:12863313..12863337 (25 bp)
GCTCTCGAGCTTTGTGCGACACTAG
LOC_Os12g22800
Os.54004.1.S1_at--413--2071Chr12:12863382..12863406 (25 bp)
ACTTGGTCCGTCTTGGCAATTTGGC
LOC_Os12g22800
Os.54004.1.S1_at--502--10851Chr12:12863402..12863426 (25 bp)
TTGGCATGCATGTAGGACGGACACT
LOC_Os12g22800
Os.54004.1.S1_at--907--8671Chr12:12863426..12863450 (25 bp)
TGTGATGCCGTCTAGACCTCTTGGA
LOC_Os12g22800
Os.54004.1.S1_at--634--1351Chr12:12863468..12863492 (25 bp)
AGAGATGCGACTTCACTTACATAAT
LOC_Os12g22800
Target Sequence 
GTAGGACTCAATTGCGTCGCCTGAATCATAAAGAAGATGCAATCTACAAGGCTACGCATGGCAACATTGTTCAACTGTAC
CGAGAAAGCCTCACAATATATATGTGGACCGATTGGCCTTTATTTTGTGGTTGAAGACGTTTGTCCAGACTGCAGTCTGG
GGTGCAAGCAACTGTTGCTTGCACCTAGTGAAAATTTGTTACTGCCATATATGTAAATTATCTAGGAAAACGAATGGTAG
ATGATCTGAAGCTAGCTAGCTAATCTAATTTGCAGAGCCTTGCTGCTTGCCGTGGCTCTTCATCAGCCGTGGTAGAACGC
TCTCGAGCTTTGTGCGACACTAGCTAGTGCCCCTTCATCGTTCTACGTGGGGAGCTTTTGTTTTTTTACTTGGTCCGTCT
TGGCAATTTGGCATGCATGTAGGACGGACACTGTGATGCCGTCTAGACCTCTTGGAGGGGGGGACAAGTTGTCAGAGATG
CGACTTCACTTACATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis