Browse Element(s) Details


Os.54014.1.S1_x_at

Description gb:AK101283.1
DB_XREF= gi:32986492
TID=Os.54014.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033D19, full insert sequence.
FL= gb:AK101283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0790010/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07850NANA9+3982802..3992543retrotransposon protein, putative, unclassified
LOC_Os09g07860NANA9+3996128..3998649transposon protein, putative, unclassified
LOC_Os09g07870NANA9+3998931..4001868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07880NANA9+4003816..4006901hypothetical protein
LOC_Os09g07890OsAffx.22699.1.S1_x_at3/119+4007882..4013467retrotransposon protein, putative, unclassified
LOC_Os09g07900Os.16069.2.S1_s_at11/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.54014.1.S1_x_at10/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.16069.1.S1_at9/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.52150.1.S1_at2/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07900Os.52150.1.S1_x_at1/119+4015486..4035011HECT-domain family protein, expressed
LOC_Os09g07910OsAffx.32332.1.S1_x_at6/119+4036616..4037693DNA-directed RNA polymerase alpha chain, putative
LOC_Os09g07910OsAffx.32331.1.S1_x_at3/119+4036616..4037693DNA-directed RNA polymerase alpha chain, putative
LOC_Os09g07920OsAffx.17596.1.S1_at9/119+4041760..4044191nitrate-induced NOI protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54014.1.S1_x_at--65--6611Chr09:4022547..4022571 (25 bp)
GATTGGTTGTTCAGCCATCCAGAAG
LOC_Os09g07900
Os.54014.1.S1_x_at--507--5351Chr09:4022583..4022607 (25 bp)
GAAGATGTCCAGCTTGCACAGGCAT
LOC_Os09g07900
Os.54014.1.S1_x_at--310--3491Chr09:4022601..4022625 (25 bp)
CAGGCATTAGCTTTGTCACTTGGAA
LOC_Os09g07900
Os.54014.1.S1_x_at--611--2351Chr09:4022735..4022759 (25 bp)
AAAGCTCTTCTCTTCTGGTGATGAC
LOC_Os09g07900
Os.54014.1.S1_x_at--917--8271Chr09:4022762..4022786 (25 bp)
GGCTTTCCCATTGACTGATCTTTTA
LOC_Os09g07900
Os.54014.1.S1_x_at--1129--4011Chr09:4022820..4022844 (25 bp)
CGTCAGCCGGTTATCTTATATCTTT
LOC_Os09g07900
Os.54014.1.S1_x_at--785--2371NONE
AAACGTTTTCCATCATATTCTTCAG
NONE
Os.54014.1.S1_x_at--1107--111Chr09:4022872..4022896 (25 bp)
ATTCTTCAGTTGATGCAGGCGCATT
LOC_Os09g07900
Os.54014.1.S1_x_at--899--8391Chr09:4022889..4022913 (25 bp)
GGCGCATTATATTCTTTTGCCCGTT
LOC_Os09g07900
Os.54014.1.S1_x_at--663--10691Chr09:4022913..4022937 (25 bp)
TTGCTGGCCTTACTTCTGAGTGAAG
LOC_Os09g07900
Os.54014.1.S1_x_at--1133--7491Chr09:4022973..4022997 (25 bp)
GTGGTCCCTCATGTTCTTAATTTAT
LOC_Os09g07900
Target Sequence 
GATTGGTTGTTCAGCCATCCAGAAGAGTTTGTTCAAGAAGATGTCCAGCTTGCACAGGCATTAGCTTTGTCACTTGGAAA
CACCACTGAAGCATCCAAGGAAGATGGTTGCAATAAGAATGGTCCAAGTGTCGTTGAAGATAAAGGTGTCATCTTGCTTC
CTTTGGATGACATTCTTGCTGTATCAACAAAGCTCTTCTCTTCTGGTGATGACATGGCTTTCCCATTGACTGATCTTTTA
GTTACACTGTGCAACCAGAATAAGGGAGATGACCGTCAGCCGGTTATCTTATATCTTTTTGAGCAACTTAAACGTTTTCC
ATCATATTCTTCAGTTGATGCAGGCGCATTATATTCTTTTGCCCGTTTGCTGGCCTTACTTCTGAGTGAAGACAGTAGCA
TTCGTGAAATTGGTGCAGAAAATGGCGTGGTCCCTCATGTTCTTAATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54014.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis