Browse Element(s) Details


Os.54120.1.S1_at

Description gb:AK102049.1
DB_XREF= gi:32987258
TID=Os.54120.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082A18, full insert sequence.
FL= gb:AK102049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4167011/11NB-ARC domain containing protein, expressed
LOC_Os04g315501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41630OsAffx.28048.2.S1_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41630OsAffx.28048.2.S1_x_at1/116+24927488..24928347hypothetical protein
LOC_Os06g41640NANA6+24929058..24934196NB-ARC domain containing protein, expressed
LOC_Os06g41650Os.15920.1.S1_at2/116+24936487..24936777hypothetical protein
LOC_Os06g41660Os.50308.1.S1_at11/116+24938167..24944225NB-ARC domain containing protein, expressed
LOC_Os06g41670Os.54120.1.S1_at11/116+24953267..24958581NB-ARC domain containing protein, expressed
LOC_Os06g41680NANA6+24962377..24963245hypothetical protein
LOC_Os06g41690Os.53845.1.S1_at10/116+24965560..24977049retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g41700Os.54103.1.S1_at11/116+24981202..24985655Alpha-expansin 20 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54120.1.S1_at--707--3031Chr06:24953720..24953744 (25 bp)
AATCCAGCGGTCAATTCAATCCAGT
LOC_Os06g41670
Os.54120.1.S1_at--642--1171Chr06:24953649..24953673 (25 bp)
AGTAAACTATCTGGGCTGTCCTCCG
LOC_Os06g41670
Os.54120.1.S1_at--77--2691Chr06:24953624..24953648 (25 bp)
AAGCTGTAGGCCTGCCGGTGATCAC
LOC_Os06g41670
Os.54120.1.S1_at--994--1552Chr04:18682525..18682666 (25 bp)
AGCTTCATCACATCTACCTGTGTGG
LOC_Os04g31550
Os.54120.1.S1_at--1041--7531Chr06:24953574..24953598 (25 bp)
GTGGCTGTGCTGACCTGGCCAAAAA
LOC_Os06g41670
Os.54120.1.S1_at--932--4351Chr06:24953539..24953563 (25 bp)
CCACCTGTGGGTTCTATTTTAATCA
LOC_Os06g41670
Os.54120.1.S1_at--158--931Chr06:24953499..24953523 (25 bp)
AGGCTTGTGCATTTTCACATCTAAA
LOC_Os06g41670
Os.54120.1.S1_at--670--2511Chr06:24953453..24953477 (25 bp)
AACATTCACCATTCATTGCTTGCGT
LOC_Os06g41670
Os.54120.1.S1_at--567--4911Chr06:24953436..24953460 (25 bp)
GCTTGCGTTTTATACTTTTTCTACA
LOC_Os06g41670
Os.54120.1.S1_at--993--2971Chr06:24953405..24953429 (25 bp)
AATGTTGCCATCTGCTCACCAGGAG
LOC_Os06g41670
Os.54120.1.S1_at--681--4831Chr06:24953392..24953416 (25 bp)
GCTCACCAGGAGTATCTTTCTTGTG
LOC_Os06g41670
Target Sequence 
AATCCAGCGGTCAATTCAATCCAGTCTACTGCATCCAACTGATTCTTCAGCAAGTTCTTCCAGTTTTCTTCAGTAAACTA
TCTGGGCTGTCCTCCGAAGCTGTAGGCCTGCCGGTGATCACCTACAGCTTCATCACATCTACCTGTGTGGCTGTGCTGAC
CTGGCCAAAAAAAAAAAAATTCCACCTGTGGGTTCTATTTTAATCAAGCCAACTTATTATGAGGCTTGTGCATTTTCACA
TCTAAACCTATTATTTATGCATTACAGAACATTCACCATTCATTGCTTGCGTTTTATACTTTTTCTACAAGATGCAATGT
TGCCATCTGCTCACCAGGAGTATCTTTCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis