Browse Element(s) Details


Os.54122.1.S1_at

Description gb:AK102056.1
DB_XREF= gi:32987265
TID=Os.54122.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D02, full insert sequence.
FL= gb:AK102056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3701011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36980OsAffx.19206.1.S1_x_at10/1111+21323412..21324285hypothetical protein
LOC_Os11g36980Os.27542.1.A1_at2/1111+21323412..21324285hypothetical protein
LOC_Os11g36990NANA11+21326069..21329390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37000Os.50473.1.S1_at11/1111+21337869..21342223DnaJ domain containing protein, expressed
LOC_Os11g37010Os.54122.1.S1_at11/1111+21348936..21350769expressed protein
LOC_Os11g37020NANA11+21352055..21353460retrotransposon protein, putative, unclassified
LOC_Os11g37040Os.53816.1.S1_at11/1111+21359150..21362535expressed protein
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54122.1.S1_at--789--10211Chr11:21350176..21350200 (25 bp)
TATTGCCAGCTCTCGTTCGCAAGGG
LOC_Os11g37010
Os.54122.1.S1_at--1049--4231Chr11:21350230..21350254 (25 bp)
CCGTATTCCGACTATGAGGACTGTT
LOC_Os11g37010
Os.54122.1.S1_at--800--1311Chr11:21350262..21350286 (25 bp)
AGATGGGTTGCTGTATGCTGCGACT
LOC_Os11g37010
Os.54122.1.S1_at--890--9851Chr11:21350300..21350324 (25 bp)
TACACATGTTTGATCTTACCGACCC
LOC_Os11g37010
Os.54122.1.S1_at--1099--3271Chr11:21350324..21350348 (25 bp)
CAAAGGTCGCGCCAAAGATAGTTAT
LOC_Os11g37010
Os.54122.1.S1_at--653--10731Chr11:21350390..21350414 (25 bp)
TTGAAGCTTCATGCGGTAACCTACT
LOC_Os11g37010
Os.54122.1.S1_at--23--4311Chr11:21350409..21350433 (25 bp)
CCTACTGCAAATTTGGCGGTCCGAT
LOC_Os11g37010
Os.54122.1.S1_at--579--8431Chr11:21350422..21350446 (25 bp)
TGGCGGTCCGATGATCTACCGAAGT
LOC_Os11g37010
Os.54122.1.S1_at--687--5251Chr11:21350494..21350518 (25 bp)
GAATCTGAGTTCGACTCTGAGTCAT
LOC_Os11g37010
Os.54122.1.S1_at--847--5971Chr11:21350599..21350623 (25 bp)
GAGAACTTGCTGTTTCTTGGGCACG
LOC_Os11g37010
Os.54122.1.S1_at--1122--2371Chr11:21350627..21350651 (25 bp)
AAACGCTTTGACTCCACGCTGAAGA
LOC_Os11g37010
Target Sequence 
TATTGCCAGCTCTCGTTCGCAAGGGCTGGTGATGATAAGTGGACATGGCTGCCCCCGTATTCCGACTATGAGGACTGTTT
TTTTAAAGATGGGTTGCTGTATGCTGCGACTTTGTTAGGAGAAATACACATGTTTGATCTTACCGACCCAAAGGTCGCGC
CAAAGATAGTTATGGGTAAGGTGAAGGACTTTCTGTATGAGAATATTTATATCGTTGAAGCTTCATGCGGTAACCTACTG
CAAATTTGGCGGTCCGATGATCTACCGAAGTGGGATGTACCGGAGGGGGATGAAGATGATGATCACTCGTTTGATTCAGA
ATCTGAGTTCGACTCTGAGTCATATGTGTGTGATACTAACACGATCAAGGTACATAAAGTGAGTTTGACAGAAGGAAAGA
TTGTGGAAATAAGTAGCTTGGACGAGAACTTGCTGTTTCTTGGGCACGGCCAAACGCTTTGACTCCACGCTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis