Browse Element(s) Details


Os.54128.1.S1_at

Description gb:AK108591.1
DB_XREF= gi:32993800
TID=Os.54128.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-D03, full insert sequence.
FL= gb:AK108591.1 gb:AK102074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0503011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04980OsAffx.29724.4.S1_at1/119+2679970..2680590hypothetical protein
LOC_Os09g04990Os.54379.1.S1_at11/119+2684795..2687286Cytoskeletal protein, putative, expressed
LOC_Os09g05000NANA9+2692800..2693939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05020Os.38393.1.S1_at11/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020Os.23189.1.S1_at10/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020OsAffx.6178.1.S1_at9/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05030Os.54128.1.S1_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05030Os.54128.1.S2_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05040OsAffx.17572.1.S1_at10/119+2710085..2711514hypothetical protein
LOC_Os09g05050NANA9+2715010..2715649retrotransposon, putative, centromere-specific
LOC_Os09g05060OsAffx.19542.3.S1_x_at3/119+2718889..2722767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05070OsAffx.8201.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05070OsAffx.22699.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05080NANA9+2730819..2736327retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54128.1.S1_at--1024--7011Chr09:2704766..2704790 (25 bp)
GTACAGGAGTCAGCTGGCCGTGCCT
LOC_Os09g05030
Os.54128.1.S1_at--49--8431Chr09:2704751..2704775 (25 bp)
GGCCGTGCCTTGCTTGCTTTGATGA
LOC_Os09g05030
Os.54128.1.S1_at--96--10151Chr09:2704628..2704652 (25 bp)
TATCCAGTCTCAGTTGTTCTAGCTC
LOC_Os09g05030
Os.54128.1.S1_at--826--6711Chr09:2704613..2704637 (25 bp)
GTTCTAGCTCTAGCCTTGGGTGGTG
LOC_Os09g05030
Os.54128.1.S1_at--392--911Chr09:2704574..2704598 (25 bp)
AGGCGGCTTGCGGATTCTGGCATTT
LOC_Os09g05030
Os.54128.1.S1_at--945--6151Chr09:2704491..2704515 (25 bp)
GAGGATTTCTGGCAATCGACTCAAG
LOC_Os09g05030
Os.54128.1.S1_at--1146--5491Chr09:2704446..2704470 (25 bp)
GAACAACTAGTCAGTCTGCCATGTT
LOC_Os09g05030
Os.54128.1.S1_at--1114--10571Chr09:2704404..2704428 (25 bp)
TTCTACATCTCTCCTTTTGATCATG
LOC_Os09g05030
Os.54128.1.S1_at--288--2531Chr09:2704351..2704375 (25 bp)
AACTACTACCAATTTTGCTCCCAAG
LOC_Os09g05030
Os.54128.1.S1_at--483--8691Chr09:2704336..2704360 (25 bp)
TGCTCCCAAGGCCAGAAATTTTACT
LOC_Os09g05030
Os.54128.1.S1_at--252--2031Chr09:2704260..2704284 (25 bp)
ACTACGCATATTGCCATGTTCCAAG
LOC_Os09g05030
Target Sequence 
GTACAGGAGTCAGCTGGCCGTGCCTTGCTTGCTTTGATGACCTTGAAGTTTAACCGGAAGGAATTGGTCAGGGATGAGAA
GAGTGTGACTAGGTTATTGCACATGCTTGATCCGAGGAATGAAGAGATTGATAAAAAGTATCCAGTCTCAGTTGTTCTAG
CTCTAGCCTTGGGTGGTGGGAATGGGACACGGAGGCGGCTTGCGGATTCTGGCATTTGCCAGCATTTACAGAAGTTGGCT
GAGGCTGAGGTGCCTGGTGCAAAGAAGGCTTTGCAGAGGATTTCTGGCAATCGACTCAAGAGCTTACTCTCTAGAGGATG
GAACAACTAGTCAGTCTGCCATGTTGGGGTAAATATAGAACTTTCTACATCTCTCCTTTTGATCATGATTATATTGTATG
GTTGTGAACTTTACTAACTACTACCAATTTTGCTCCCAAGGCCAGAAATTTTACTCCCTCTTTAAGAAGGATGAATTTCA
CATACAATTTTTTTTTCCATACTGGAACTACGCATATTGCCATGTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis