Browse Element(s) Details


Os.54130.1.S1_at

Description gb:AK102076.1
DB_XREF= gi:32987285
TID=Os.54130.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082I06, full insert sequence.
FL= gb:AK102076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g400503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40020Os.56993.1.S1_at11/114+23599462..23600314expressed protein
LOC_Os04g40030OsAffx.26400.1.S1_at11/114+23607513..23609887F-box domain containing protein, expressed
LOC_Os04g40040Os.9293.1.S1_at11/114+23610611..23617066Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54130.1.S1_at--688--2391Chr04:23628198..23628222 (25 bp)
AAACTAGCGAAGCTTCCTTCTGTGC
LOC_Os04g40050
Os.54130.1.S1_at--729--3411Chr04:23628222..23628246 (25 bp)
CAGAGAATTCTCCTGTACCTTTCCA
LOC_Os04g40050
Os.54130.1.S1_at--813--1391Chr04:23628422..23628446 (25 bp)
AGACATGTTCCGGAGGGTCACAAGG
LOC_Os04g40050
Os.54130.1.S1_at--262--5691Chr04:23628479..23628503 (25 bp)
GACTTGGTTCTGATTTCGCCATCGA
NONE
Os.54130.1.S1_at--265--4291Chr04:23628506..23628530 (25 bp)
CCTCGCAAGGCGCTTCATATTATTG
NONE
Os.54130.1.S1_at--85--4911Chr04:23628569..23628593 (25 bp)
GCTTCAGAAGCATTCGTGCAGCTAA
NONE
Os.54130.1.S1_at--901--6091Chr04:23628687..23628711 (25 bp)
GAGTCTTGTACTATCCTACTGATTT
NONE
Os.54130.1.S1_at--420--6911Chr04:23628712..23628736 (25 bp)
GTATCGTACCAACCAATTTCCTTGA
NONE
Os.54130.1.S1_at--985--10651Chr04:23628729..23628753 (25 bp)
TTCCTTGAACATCTTGGCCTTGGGT
NONE
Os.54130.1.S1_at--593--8451Chr04:23628743..23628767 (25 bp)
TGGCCTTGGGTCACTAGAGTAATCT
NONE
Os.54130.1.S1_at--328--10831Chr04:23628788..23628812 (25 bp)
TTGTGAGCTTCAACACTTCCTATTT
NONE
Target Sequence 
AAACTAGCGAAGCTTCCTTCTGTGCAGAGAATTCTCCTGTACCTTTCCACCCTGCTGAGGAGAAGCTTGGAAGTAGTAGC
ACTAGGTCAAGCAAAGGGAGGCCAGCAAAGAAACAAAAGGCTGAGGTAGAATCGAAGAACATCAAAGACATGTTCCGGAG
GGTCACAAGGAAAGGAACGTGATCCCATATTATTTATAGTATGACTTGGTTCTGATTTCGCCATCGAGACCTCGCAAGGC
GCTTCATATTATTGAGGGAAAGCTGAGGTTTTCAGATTAAAGCATTGTTTATGCTTCAGAAGCATTCGTGCAGCTAATGG
AATTAACTGTTTAACAAATTTACTCCAAGTCTCAACTTTGTTAGGTTTGAAATGTAGCATTGCAGGCGTGTATTTAAGTA
TTTGAGCAAAGAGTCTTGTACTATCCTACTGATTTGTATCGTACCAACCAATTTCCTTGAACATCTTGGCCTTGGGTCAC
TAGAGTAATCTGAAATGGTTGTTAATGTTATTTGTGAGCTTCAACACTTCCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis