Browse Element(s) Details


Os.54150.1.S1_at

Description gb:AK102195.1
DB_XREF= gi:32987404
TID=Os.54150.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087C22, full insert sequence.
FL= gb:AK102195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4478011/11elongation factor Tu family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44750NANA3+25181782..25182444expressed protein
LOC_Os03g44760Os.49442.2.S1_x_at11/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44760OsAffx.16734.1.S1_at1/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44780Os.54150.1.S1_at11/113+25205168..25208480elongation factor Tu family protein, putative, expressed
LOC_Os03g44800OsAffx.13351.1.S1_at11/113+25218463..25222121expressed protein
LOC_Os03g44810Os.54281.1.S1_at11/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44810OsAffx.29100.1.S1_at1/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44820Os.8552.1.S1_at10/113+25230628..25232697glutamyl-tRNA amidotransferase, C subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54150.1.S1_at--908--2132Chr04:24747978..24748284 (25 bp)
ACAGTACAACATCTTCAGTGGTCAA
NONE
Os.54150.1.S1_at--800--7071Chr03:25207905..25207929 (25 bp)
GTCAAGTAATTACCGCTGTTAAGGA
LOC_Os03g44780
Os.54150.1.S1_at--381--9011Chr03:25207990..25208014 (25 bp)
TGAATTGACCACACCAACCGAACAA
LOC_Os03g44780
Os.54150.1.S1_at--16--3911Chr03:25208015..25208039 (25 bp)
CTGGGTGCGACATATGCAGTTCTTA
LOC_Os03g44780
Os.54150.1.S1_at--225--5491Chr03:25208082..25208106 (25 bp)
GAACTTCTTTATTTACTGTGCACGC
LOC_Os03g44780
Os.54150.1.S1_at--501--8691Chr03:25208098..25208122 (25 bp)
TGTGCACGCATACTTACCAGTTGCT
LOC_Os03g44780
Os.54150.1.S1_at--664--6671Chr03:25208117..25208141 (25 bp)
GTTGCTGAGAGCGTTGGATTTTCTA
LOC_Os03g44780
Os.54150.1.S1_at--745--7031Chr03:25208156..25208180 (25 bp)
GTAACAGCTGGTGCAGCCAGTGCTC
LOC_Os03g44780
Os.54150.1.S1_at--1035--9471Chr03:25208179..25208203 (25 bp)
TCTGCTTGTTCTTAGCCACTGGGAA
LOC_Os03g44780
Os.54150.1.S1_at--562--4391Chr03:25208193..25208217 (25 bp)
GCCACTGGGAAGCTATTCCTGAGGA
LOC_Os03g44780
Os.54150.1.S1_at--1143--811Chr03:25208265..25208289 (25 bp)
ATGGTTCCAGCATTGGGCCAAACTT
LOC_Os03g44780
Target Sequence 
ACAGTACAACATCTTCAGTGGTCAAGTAATTACCGCTGTTAAGGAAGCATGTCGAGAAGCTGTTGTTCAGAACAAACCAA
GGCTAGTTGAAGCTATGTACTTCTGTGAATTGACCACACCAACCGAACAACTGGGTGCGACATATGCAGTTCTTAGTAGG
AAGCGAGCAAGGGTTCTGAAGGAGGAGATGCAAGAGGGAACTTCTTTATTTACTGTGCACGCATACTTACCAGTTGCTGA
GAGCGTTGGATTTTCTAATGAGCTTAGGAGTGTAACAGCTGGTGCAGCCAGTGCTCTGCTTGTTCTTAGCCACTGGGAAG
CTATTCCTGAGGACCCTTTCTTTATCCCAAAAACGCATGAGGAGATTGAAGAATTTGGAGATGGTTCCAGCATTGGGCCA
AACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis