Browse Element(s) Details


Os.54167.1.S1_at

Description gb:AK102268.1
DB_XREF= gi:32987477
TID=Os.54167.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088O08, full insert sequence.
FL= gb:AK102268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0558011/11Protein kinase domain containing protein, expressed
LOC_Os04g062443/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05540OsAffx.7633.1.S1_at1/114+2786787..2788482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05550OsAffx.3727.1.S1_at11/114+2789616..2790100hypothetical protein
LOC_Os04g05550OsAffx.25888.2.S1_x_at1/114+2789616..2790100hypothetical protein
LOC_Os04g05560OsAffx.25876.1.S1_at11/114+2796189..2798730Protein kinase domain containing protein
LOC_Os04g05570OsAffx.32023.1.S1_at11/114+2805543..2809038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05580Os.54167.1.S1_at11/114+2813295..2817621Protein kinase domain containing protein, expressed
LOC_Os04g05590OsAffx.25936.7.S1_s_at7/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05590OsAffx.25936.1.S1_s_at6/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05590OsAffx.25936.2.S1_x_at4/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05590OsAffx.25936.5.S1_x_at2/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05600NANA4+2836848..2837300hypothetical protein
LOC_Os04g05610Os.10827.1.S1_x_at10/114+2837914..2841186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05610Os.46055.2.S1_x_at6/114+2837914..2841186transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54167.1.S1_at--1141--8191Chr04:2817104..2817128 (25 bp)
GGCAAGGCCAGATACCTGGATCCAG
LOC_Os04g05580
Os.54167.1.S1_at--193--8671Chr04:2817234..2817258 (25 bp)
TGTGGAGCCGGTATCTAGAGAAGTC
LOC_Os04g05580
Os.54167.1.S1_at--1054--5312Chr04:2817253..2817277 (25 bp)
GAAGTCTCTGATGCAGGTAGCTGAT
LOC_Os04g05580
Os.54167.1.S1_at--62--7692Chr04:3229947..3229971 (25 bp)
GGGTTATGGTGTTGTCAGCCCAATA
LOC_Os04g06244
Os.54167.1.S1_at--1051--3171Chr04:2817352..2817376 (25 bp)
CAATATTGACATGCGGCCTACCGTG
LOC_Os04g05580
Os.54167.1.S1_at--628--8431Chr04:2817366..2817390 (25 bp)
GGCCTACCGTGCAACAAGCAATGGA
LOC_Os04g05580
Os.54167.1.S1_at--460--1332Chr04:3230014..3230038 (25 bp)
AGAGTGATGGGCCATTGCCTGAATT
LOC_Os04g06244
Os.54167.1.S1_at--180--9011Chr04:2817418..2817442 (25 bp)
TGAATTGGCTGAACCGGAGACCTCC
LOC_Os04g05580
Os.54167.1.S1_at--972--8051Chr04:2817433..2817457 (25 bp)
GGAGACCTCCTCAAGTAAAATTGGT
LOC_Os04g05580
Os.54167.1.S1_at--629--10032Chr04:3230082..3230106 (25 bp)
TAGTATTAGTCCTGCTCTACCAGCA
NONE
Os.54167.1.S1_at--310--6592Chr04:3230181..3230205 (25 bp)
GATTCCTGCAAGTTATTGTATCTTC
NONE
Target Sequence 
GGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCANCTCGGATGTCTACAGCTTTNGGAT
TGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGA
TGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGT
TGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATT
GGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGNTCAGGCGAA
GAACTNCTGGACTTAGTTAATAAATGCTTGGNNTTAATACGNGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTATTG
TATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis