Browse Element(s) Details


Os.54169.1.S1_at

Description gb:AK102280.1
DB_XREF= gi:32987489
TID=Os.54169.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089E12, full insert sequence.
FL= gb:AK102280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1881011/11pentatricopeptide, putative, expressed
LOC_Os10g210701/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18760OsAffx.28462.1.S1_at1/112+10934277..10938654retrotransposon protein, putative, unclassified
LOC_Os02g18770OsAffx.12105.1.S1_at11/112+10939563..10941269hypothetical protein
LOC_Os02g18770Os.57362.1.S1_at1/112+10939563..10941269hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_x_at7/112+10945254..10947535hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_at3/112+10945254..10947535hypothetical protein
LOC_Os02g18790OsAffx.2674.1.S1_at11/112+10955205..10955979hypothetical protein
LOC_Os02g18800OsAffx.29369.1.S1_at11/112+10959461..10960432hypothetical protein
LOC_Os02g18810Os.54169.1.S1_at11/112+10960659..10968044pentatricopeptide, putative, expressed
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54169.1.S1_at--1161--1231Chr02:10965427..10965451 (25 bp)
AGTTGCAGCCGTCGCCTAAGGTATG
LOC_Os02g18810
Os.54169.1.S1_at--1095--4491Chr02:10965434..10965458 (25 bp)
GCCGTCGCCTAAGGTATGTCAAATC
LOC_Os02g18810
Os.54169.1.S1_at--845--7771Chr02:10965505..10965529 (25 bp)
GGTGCTTCTTGGGTCATTTGCAAAC
LOC_Os02g18810
Os.54169.1.S1_at--76--10271Chr02:10965521..10965545 (25 bp)
TTTGCAAACACCTCCTCTAAGATAG
LOC_Os02g18810
Os.54169.1.S1_at--802--2791Chr02:10965539..10965563 (25 bp)
AAGATAGCCTGTCTGCAAACACCAC
LOC_Os02g18810
Os.54169.1.S1_at--796--5131Chr02:10965553..10965577 (25 bp)
GCAAACACCACTTTCTTAATCGAGA
LOC_Os02g18810
Os.54169.1.S1_at--113--7511Chr02:10965580..10965604 (25 bp)
GTGGTACTTCTTGATTCTAATTGAT
LOC_Os02g18810
Os.54169.1.S1_at--1124--10511Chr02:10967850..10967874 (25 bp)
TTCAGTAGATCCAGAAGCTCCCTTG
LOC_Os02g18810
Os.54169.1.S1_at--223--5411Chr02:10967863..10967887 (25 bp)
GAAGCTCCCTTGCTCATAGCATAGA
LOC_Os02g18810
Os.54169.1.S1_at--632--3852Chr03:35093453..35093477 (25 bp)
CTGAATATATGCCAGGGTGTGCCCC
NONE
Os.54169.1.S1_at--919--6252Chr10:10344127..10344533 (25 bp)
GATGAACTTTTTTCTTTAGTGACTA
LOC_Os10g21070
Target Sequence 
AGTTGCAGCCGTCGCCTAAGGTATGTCAAATCGAGAGAGGAGATTGGACGCTGTGGCGCTGTGTTCTGTGTGGTTGGTGG
TGCTTCTTGGGTCATTTGCAAACACCTCCTCTAAGATAGCCTGTCTGCAAACACCACTTTCTTAATCGAGAAGGTGGTAC
TTCTTGATTCTAATTGATGAATCAAGAAAGATGGAGTCTAGTATATACAAAATGTGGTCATTTGCAAAGCAGACAGAGAA
AAGGGTTGAAGATCTATATTCAGATGTGAAAAAGGCGAAGATGAACTTGATGAAGGAATCTAAACATTCAGTAGATCCAG
AAGCTCCCTTGCTCATAGCATAGACCCTTGAATTTTATTGAATAGTTAGTTTATGAAACTTTCGTTACTGAATATATGCC
AGGGTGTGCCCCCAAGAATCACGTATTTTTGGGATTTGAAATGAAATAGTACCAAACAAATTTGGAGAGTGATGAACTTT
TTTCTTTAGTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis