Browse Element(s) Details


OsAffx.14722.1.S1_at

Description tigr:9633.m01438
TID=OsAffx.14722.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1616011/11hypothetical protein
LOC_Os02g187803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16120NANA5+9090785..9096940retrotransposon protein, putative, unclassified
LOC_Os05g16130NANA5+9097558..9100785transposon protein, putative, unclassified
LOC_Os05g16140OsAffx.4355.1.S1_at11/115+9107443..9109023hypothetical protein
LOC_Os05g16150OsAffx.14721.1.S1_at11/115+9115197..9116724hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_x_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160Os.49640.1.S1_at2/115+9117218..9117766hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_x_at8/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_at7/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.31529.1.S1_at2/115+9120092..9122787hypothetical protein
LOC_Os05g16180OsAffx.4356.1.S1_at10/115+9123860..9129102NB-ARC domain containing protein
LOC_Os05g16200OsAffx.4357.1.S1_at11/115+9130647..9134281NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14722.1.S1_at--206--8711Chr05:9117513..9117537 (25 bp)
TGTCCATGGCGCGGCATCGAGATCG
LOC_Os05g16160
OsAffx.14722.1.S1_at--764--871Chr05:9117518..9117542 (25 bp)
ATGGCGCGGCATCGAGATCGGCGTG
LOC_Os05g16160
OsAffx.14722.1.S1_at--318--5392Chr05:9117596..9117677 (25 bp)
GAAGCAGCTAGTTCAGAGTTTGTTC
LOC_Os05g16160
OsAffx.14722.1.S1_at--537--1512Chr05:9117598..9117679 (25 bp)
AGCAGCTAGTTCAGAGTTTGTTCAG
LOC_Os05g16160
OsAffx.14722.1.S1_at--313--3392Chr05:9117572..9117681 (25 bp)
CAGCTAGTTCAGAGTTTGTTCAGTT
LOC_Os05g16160
OsAffx.14722.1.S1_at--180--10611Chr05:9117691..9117715 (25 bp)
TTCTGTAATGCTAGCAGTTGGTGAT
LOC_Os05g16160
OsAffx.14722.1.S1_at--342--7071Chr05:9117695..9117719 (25 bp)
GTAATGCTAGCAGTTGGTGATCTTT
LOC_Os05g16160
OsAffx.14722.1.S1_at--935--3011Chr05:9117697..9117721 (25 bp)
AATGCTAGCAGTTGGTGATCTTTTT
LOC_Os05g16160
OsAffx.14722.1.S1_at--76--9091Chr05:9117699..9117723 (25 bp)
TGCTAGCAGTTGGTGATCTTTTTAT
LOC_Os05g16160
OsAffx.14722.1.S1_at--15--7413Chr05:9117711..9117735 (25 bp)
GTGATCTTTTTATGTGTGGACTTAG
LOC_Os05g16160
OsAffx.14722.1.S1_at--1076--8813Chr05:9117712..9117736 (25 bp)
TGATCTTTTTATGTGTGGACTTAGT
LOC_Os05g16160
Target Sequence 
TGTCCATGGCGCGGCATCGAGATCGGCGTGGCGCTGCCGGAGTCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGG
ACTGAAGCAGCTAGTTCAGAGTTTGTTCAGTTTGGGTGTGATTCTGTAATGCTAGCAGTTGGTGATCTTTTTATGTGTGG
ACTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis