Browse Element(s) Details


Os.49640.1.S1_at

Description gb:AK100771.1
DB_XREF= gi:32985980
TID=Os.49640.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120A02, full insert sequence.
FL= gb:AK100771.1 gb:AK060511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5748011/11Transferase family protein, expressed
LOC_Os05g161602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49640.1.S1_at--911--4111Chr02:35216639..35216663 (25 bp)
CGCGGTACGGCGTGTACGACACCGA
LOC_Os02g57480
Os.49640.1.S1_at--1086--8971Chr02:35216450..35216474 (25 bp)
TGAAGCAGCTGTGAGTGACGAACAG
LOC_Os02g57480
Os.49640.1.S1_at--751--5792Chr05:9117610..9117634 (25 bp)
GACGAACAGCTTGTTGCATTTCTTG
LOC_Os05g16160
Os.49640.1.S1_at--29--192Chr05:9117627..9117649 (23 bp)
ATTTCTTGCTTTCTTGCTGCTACGA
LOC_Os05g16160
Os.49640.1.S1_at--1069--4871Chr02:35216410..35216434 (25 bp)
GCTTTCTTGCTGCTACGAATTGTTG
LOC_Os02g57480
Os.49640.1.S1_at--1071--9932Chr04:17908084..17908108 (25 bp)
TACGAATTGTTGCAGAGTTCAGAAT
NONE
Os.49640.1.S1_at--651--9471Chr02:35216352..35216376 (25 bp)
TCTGTAATGCTAGCTGTTGGATTGC
LOC_Os02g57480
Os.49640.1.S1_at--440--7931Chr02:35216334..35216358 (25 bp)
GGATTGCAATCGTTGATCGATCACA
LOC_Os02g57480
Os.49640.1.S1_at--430--6471Chr02:35216266..35216290 (25 bp)
GATAAGCTGTAATCTATTCTACATT
LOC_Os02g57480
Os.49640.1.S1_at--900--5011Chr02:35216226..35216250 (25 bp)
GCAGGATAAGGCCTGCTTCGATCAA
LOC_Os02g57480
Os.49640.1.S1_at--13--4291Chr02:35216215..35216239 (25 bp)
CCTGCTTCGATCAACTTCTGTTATA
LOC_Os02g57480
Target Sequence 
CGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCC
GGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGC
GCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCT
GCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTG
ATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTT
TTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis