Browse Element(s) Details


Os.47495.1.S1_at

Description gb:AK059979.1
DB_XREF= gi:32969997
TID=Os.47495.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-D11, full insert sequence.
FL= gb:AK059979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5746011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47495.1.S1_at--137--5651Chr02:35211353..35211377 (25 bp)
GACAGCCAGCTTCCATTGGATCAGT
LOC_Os02g57460
Os.47495.1.S1_at--840--9591Chr02:35211399..35211423 (25 bp)
TCATTCAGGTGATCACTGGCGCGGA
LOC_Os02g57460
Os.47495.1.S1_at--505--2211Chr02:35211436..35211460 (25 bp)
ACAAGCACCACAGCAGGAGGCCAAT
LOC_Os02g57460
Os.47495.1.S1_at--494--991Chr02:35211450..35211474 (25 bp)
AGGAGGCCAATACGGCAGCTTCTGA
LOC_Os02g57460
Os.47495.1.S1_at--421--9051Chr02:35211538..35211562 (25 bp)
TGCATGGCATGTCAGCATCAGTAAG
LOC_Os02g57460
Os.47495.1.S1_at--921--731Chr02:35211597..35211621 (25 bp)
ATGTTCTTCCATTGAGGAGGTCCTT
LOC_Os02g57460
Os.47495.1.S1_at--123--10591Chr02:35211620..35211644 (25 bp)
TTCTCCATGGACTCACTGGGTGGTG
LOC_Os02g57460
Os.47495.1.S1_at--644--7931Chr02:35211746..35211770 (25 bp)
GGATTACTATGCCTGCACATTCTAT
LOC_Os02g57460
Os.47495.1.S1_at--742--3591Chr02:35211763..35211787 (25 bp)
CATTCTATGGCCATGTTCTATGCGA
LOC_Os02g57460
Os.47495.1.S1_at--1083--3691Chr02:35211780..35211804 (25 bp)
CTATGCGAATTCTTTTGGTGGTCTT
LOC_Os02g57460
Os.47495.1.S1_at--488--7731Chr02:35211796..35211820 (25 bp)
GGTGGTCTTGTTCACCAATTTTTCT
LOC_Os02g57460
Target Sequence 
GACAGCCAGCTTCCATTGGATCAGTTCGTGAGACCTGAGGAGGTAGTCATTCAGGTGATCACTGGCGCGGAAGAAGAAGG
TGCACAAGCACCACAGCAGGAGGCCAATACGGCAGCTTCTGATCCTGCAGTAGATGCTACTAGTACAAATCAACAGGTCA
GTAGTAAGAAGACGAAGAACCAGAATGCATGGCATGTCAGCATCAGTAAGGGAGATGAGTGCATTGCAGTGAGGAGGGAC
AGAAATGTTCTTCCATTGAGGAGGTCCTTCTCCATGGACTCACTGGGTGGTGCTGGAGAGGTGCATTTGCAGATTCAGAA
TATTCTGCAGAGGAGCACCCACTTCCACGGGGATATCAGTGACAGCAGCAGCAGCAGCACTGGAACATTGTAGGGATTAC
TATGCCTGCACATTCTATGGCCATGTTCTATGCGAATTCTTTTGGTGGTCTTGTTCACCAATTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis