Browse Element(s) Details


OsAffx.2516.1.S1_at

Description tigr:9630.m00525
TID=OsAffx.2516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0597010/11Leucine Rich Repeat family protein, expressed
LOC_Os02g574201/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05930NANA2+2945362..2949235Leucine Rich Repeat family protein, expressed
LOC_Os02g05940Os.49840.1.S1_at2/112+2952434..2955583Leucine Rich Repeat family protein
LOC_Os02g05950Os.24580.2.A1_at9/112+2958769..2962175Leucine Rich Repeat family protein, expressed
LOC_Os02g05960Os.49783.1.S1_at11/112+2965238..2968656Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_s_at11/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_at10/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05980Os.49840.1.S1_at11/112+2978853..2982354Leucine Rich Repeat family protein, expressed
LOC_Os02g05990Os.14919.1.S1_at3/112+2988829..2991655hypothetical protein
LOC_Os02g06000NANA2+2992171..2994782transposon protein, putative, Mutator sub-class
LOC_Os02g06010Os.7658.1.S1_x_at11/112+2995584..2999836integral membrane family protein, putative, expressed
LOC_Os02g06010Os.8125.1.S1_x_at1/112+2995584..2999836integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2516.1.S1_at--216--4771Chr02:2972086..2972110 (25 bp)
GCTGCTGACATATTACCATTTTGCA
LOC_Os02g05970
OsAffx.2516.1.S1_at--772--3831Chr02:2972085..2972109 (25 bp)
CTGCTGACATATTACCATTTTGCAC
LOC_Os02g05970
OsAffx.2516.1.S1_at--336--3851Chr02:2972082..2972106 (25 bp)
CTGACATATTACCATTTTGCACTTT
LOC_Os02g05970
OsAffx.2516.1.S1_at--218--8951Chr02:2972081..2972105 (25 bp)
TGACATATTACCATTTTGCACTTTT
LOC_Os02g05970
OsAffx.2516.1.S1_at--691--3571Chr02:2972078..2972102 (25 bp)
CATATTACCATTTTGCACTTTTGTA
LOC_Os02g05970
OsAffx.2516.1.S1_at--230--232Chr02:2972077..2972101 (25 bp)
ATATTACCATTTTGCACTTTTGTAT
LOC_Os02g05970
OsAffx.2516.1.S1_at--946--2071Chr02:2972022..2972046 (25 bp)
ACATTTCTCCTCCACTGAAGGAAGT
LOC_Os02g05970
OsAffx.2516.1.S1_at--743--3571Chr02:2972021..2972045 (25 bp)
CATTTCTCCTCCACTGAAGGAAGTG
LOC_Os02g05970
OsAffx.2516.1.S1_at--832--191Chr02:2972020..2972044 (25 bp)
ATTTCTCCTCCACTGAAGGAAGTGC
LOC_Os02g05970
OsAffx.2516.1.S1_at--36--10311Chr02:2972019..2972043 (25 bp)
TTTCTCCTCCACTGAAGGAAGTGCT
LOC_Os02g05970
Target Sequence 
GCTGCTGACATATTACCATTTTGCACTTTTGTATCTTCTCAGGAGTTTTTAGTTTCATAACCAGACATTTCTCCTCCACT
GAAGGAAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis