Browse Element(s) Details


Os.49783.1.S1_at

Description gb:AK111546.1
DB_XREF= gi:37988209
TID=Os.49783.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047P09, full insert sequence.
FL= gb:AK111546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0596011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed
LOC_Os02g05930NANA2+2945362..2949235Leucine Rich Repeat family protein, expressed
LOC_Os02g05940Os.49840.1.S1_at2/112+2952434..2955583Leucine Rich Repeat family protein
LOC_Os02g05950Os.24580.2.A1_at9/112+2958769..2962175Leucine Rich Repeat family protein, expressed
LOC_Os02g05960Os.49783.1.S1_at11/112+2965238..2968656Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_s_at11/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_at10/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05980Os.49840.1.S1_at11/112+2978853..2982354Leucine Rich Repeat family protein, expressed
LOC_Os02g05990Os.14919.1.S1_at3/112+2988829..2991655hypothetical protein
LOC_Os02g06000NANA2+2992171..2994782transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49783.1.S1_at--269--2911Chr02:2965770..2965794 (25 bp)
AAGGTTGATCCTTCCTAGCAAAACT
LOC_Os02g05960
Os.49783.1.S1_at--183--5351Chr02:2965621..2965645 (25 bp)
GAAGACGGCCTGTTCCTTTACTGTC
LOC_Os02g05960
Os.49783.1.S1_at--856--9251Chr02:2965534..2965558 (25 bp)
TCCTGGATCCAACAGTTCGAGGCAT
LOC_Os02g05960
Os.49783.1.S1_at--1046--9171Chr02:2965473..2965497 (25 bp)
TGCCTGCAAGTGTGTCAACTATAAT
LOC_Os02g05960
Os.49783.1.S1_at--942--5331Chr02:2965424..2965448 (25 bp)
GAAGTAGTTGCTAGTCTGGACAGTA
LOC_Os02g05960
Os.49783.1.S1_at--277--8531Chr02:2965408..2965432 (25 bp)
TGGACAGTATAGACGCTGACCGAAA
LOC_Os02g05960
Os.49783.1.S1_at--195--10251Chr02:2965359..2965383 (25 bp)
TTTGTACTTTCACCCAACAGGAGTT
LOC_Os02g05960
Os.49783.1.S1_at--122--2071Chr02:2965300..2965324 (25 bp)
ACTTGTCTTATAGTTCGTTCTCCGC
LOC_Os02g05960
Os.49783.1.S1_at--5--9311Chr02:2965280..2965304 (25 bp)
TCCGCGGCTTGTGACAGACTACTAT
LOC_Os02g05960
Os.49783.1.S1_at--163--1411Chr02:2965265..2965289 (25 bp)
AGACTACTATCATTTCAGGGCATTG
LOC_Os02g05960
Os.49783.1.S1_at--110--7311Chr02:2965240..2965263 (24 bp)
GTGCTGAAAGAATTCGTCTTGCTTC
LOC_Os02g05960
Target Sequence 
AAGGTTGATCCTTCCTAGCAAAACTCATGTCACAACTGAGCTAGTTGGCACCCTGGGTTACATCCCCCCTGAGTATGGGC
AATCATGGATTGCTACATTGAGAGGCGACATATACAGTTTCGGAGTGGTCCTGCTTGAGCTTCTCACGGGAAGACGGCCT
GTTCCTTTACTGTCTACATCAAAGGAACTTGTCCCGTGGGTACAGGAGATGAGATCAGTGGGAAAACAGATCGAGGTCCT
GGATCCAACAGTTCGAGGCATGGGGTATGATGAGCAAATGCTAAAGGTGCTTGAAACTGCCTGCAAGTGTGTCAACTATA
ATCCTTTGATGAGGCCAACTATCATGGAAGTAGTTGCTAGTCTGGACAGTATAGACGCTGACCGAAACACATAACATCAA
TGATAGATAATTTTGTACTTTCACCCAACAGGAGTTTATGTAATTTCACTAGAATTAGTACTTCTGACTGACTTGTCTTA
TAGTTCGTTCTCCGCGGCTTGTGACAGACTACTATCATTTCAGGGCATTGAGTGCTGAAAGAATTCGTCTTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis