Browse Element(s) Details


Os.49104.1.A1_at

Description gb:AK111680.1
DB_XREF= gi:37988343
TID=Os.49104.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013168E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168E03, full insert sequence.
FL= gb:AK111680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0592011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein
LOC_Os02g05900Os.23551.1.S1_at10/112+2928920..2932223ternary complex factor MIP1, putative, expressed
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed
LOC_Os02g05930NANA2+2945362..2949235Leucine Rich Repeat family protein, expressed
LOC_Os02g05940Os.49840.1.S1_at2/112+2952434..2955583Leucine Rich Repeat family protein
LOC_Os02g05950Os.24580.2.A1_at9/112+2958769..2962175Leucine Rich Repeat family protein, expressed
LOC_Os02g05960Os.49783.1.S1_at11/112+2965238..2968656Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49104.1.A1_at--285--1431Chr02:2938604..2938628 (25 bp)
AGAACCCATGTCACAACAGAGCTAG
LOC_Os02g05920
Os.49104.1.A1_at--115--10251Chr02:2938505..2938529 (25 bp)
TTTGGAGTAGTCCTGCTCGAGCTGC
LOC_Os02g05920
Os.49104.1.A1_at--1054--3691Chr02:2938476..2938500 (25 bp)
CGGAAGGCGGCCTGTTCCAATCTTG
LOC_Os02g05920
Os.49104.1.A1_at--459--2451Chr02:2938441..2938465 (25 bp)
AACAACTTGTCGAGTGGGTGCAGGA
LOC_Os02g05920
Os.49104.1.A1_at--1024--9051Chr02:2938326..2938350 (25 bp)
TGCATGCCAGTGTGTAAATCATAAT
LOC_Os02g05920
Os.49104.1.A1_at--1064--331Chr02:2938283..2938307 (25 bp)
ATACAAGAGGTTGTCTCCTGCCTGG
LOC_Os02g05920
Os.49104.1.A1_at--721--3911Chr02:2938262..2938286 (25 bp)
CTGGACATCATAGGCACCGAGCTGC
LOC_Os02g05920
Os.49104.1.A1_at--772--10091Chr02:2938252..2938276 (25 bp)
TAGGCACCGAGCTGCAGACAACAAA
LOC_Os02g05920
Os.49104.1.A1_at--337--6671Chr02:2938162..2938186 (25 bp)
GTTGCACTGTACTTTGCACAGTCTC
LOC_Os02g05920
Os.49104.1.A1_at--88--5131Chr02:2938147..2938171 (25 bp)
GCACAGTCTCTCATGAATTATCTTT
LOC_Os02g05920
Os.49104.1.A1_at--63--10311Chr02:2938093..2938117 (25 bp)
TTTCCCTTCTTGTAACTATTCTGTA
LOC_Os02g05920
Target Sequence 
AGAACCCATGTCACAACAGAGCTAGTCGGCACTTTCGGTTACATCCCCCCAGAGTATGGACAAGGGTGGGTGGCTACATT
GAGAGGTGACATGTACAGCTTTGGAGTAGTCCTGCTCGAGCTGCTCACCGGAAGGCGGCCTGTTCCAATCTTGTCTTCAT
CAAAACAACTTGTCGAGTGGGTGCAGGAGATGATATCTGAAGGAAAGTATATTGAGGTCCTGGATCCAACACTCCGAGGC
ACAGGATATGAAAAACAGATGGTGAAGGTTCTTGAAGTTGCATGCCAGTGTGTAAATCATAATCCTGGAATGAGACCAAC
TATACAAGAGGTTGTCTCCTGCCTGGACATCATAGGCACCGAGCTGCAGACAACAAAACTCAATTAAAATAGAATTAGAT
AACACATGATGATCTACTTTAGAGTGCAGAGAGAAGCTGAGTGTTGCACTGTACTTTGCACAGTCTCTCATGAATTATCT
TTTTTTACTATTTTGTAATTCAAACCCATTTTTTCCCTTCTTGTAACTATTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49104.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis