Browse Element(s) Details


Os.9792.1.S1_at

Description gb:AK061136.1
DB_XREF= gi:32971154
TID=Os.9792.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-B03, full insert sequence.
FL= gb:AK061136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein
LOC_Os02g05900Os.23551.1.S1_at10/112+2928920..2932223ternary complex factor MIP1, putative, expressed
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed
LOC_Os02g05930NANA2+2945362..2949235Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9792.1.S1_at--346--2551Chr02:2922941..2922965 (25 bp)
AACTCTGCCGGTGGATTCATCCTGT
LOC_Os02g05890
Os.9792.1.S1_at--1084--8791Chr02:2922919..2922943 (25 bp)
TGTTCGTGATCGTTTTGCTTCTTGA
LOC_Os02g05890
Os.9792.1.S1_at--235--4911Chr02:2922903..2922927 (25 bp)
GCTTCTTGATTACCTGAGGGAGTTT
LOC_Os02g05890
Os.9792.1.S1_at--446--7371Chr02:2922844..2922868 (25 bp)
GTGACTATGACAATGGGCTCGCTCC
LOC_Os02g05890
Os.9792.1.S1_at--879--4791Chr02:2922828..2922852 (25 bp)
GCTCGCTCCCCAATAGTTGGTTTGT
LOC_Os02g05890
Os.9792.1.S1_at--722--6811Chr02:2922805..2922829 (25 bp)
GTTTCATAGGACACTTTAGCGACGA
LOC_Os02g05890
Os.9792.1.S1_at--1027--10331Chr02:2922791..2922815 (25 bp)
TTTAGCGACGATCCGAAATGCAAGT
LOC_Os02g05890
Os.9792.1.S1_at--411--8411Chr02:2922706..2922730 (25 bp)
GGCCCATTTGCATCCTTATCTGAAA
LOC_Os02g05890
Os.9792.1.S1_at--400--2971Chr02:2922633..2922657 (25 bp)
AATGGAGTGTAGCAGCCTTCTGGAA
LOC_Os02g05890
Os.9792.1.S1_at--507--1611Chr02:2922585..2922609 (25 bp)
AGCTGAGACTGGTGTATCAAAGGCC
LOC_Os02g05890
Os.9792.1.S1_at--925--9871Chr02:2922548..2922572 (25 bp)
TACATGATATTTGAAGGGCCTTGAT
LOC_Os02g05890
Target Sequence 
AACTCTGCCGGTGGATTCATCCTGTTCGTGATCGTTTTGCTTCTTGATTACCTGAGGGAGTTTGAGAGGAACCTGCAGAA
TGGAACAAGGAGGGGCAGTGACTATGACAATGGGCTCGCTCCCCAATAGTTGGTTTGTTTCATAGGACACTTTAGCGACG
ATCCGAAATGCAAGTGGGCTNGACCCNGTNAAANCCCACTTATAAATCATTTAAGCGGGTCGANTCCGTGGCTGGCCACT
GGCCCATTTGCATCCTTATCTGAAACTCCTTTTCTGGAAATGTGTCAAGTGANAATTGTGCCTGAGAAATGGTAATGGAG
TGTAGCAGCCTTCTGGAAAGAAATGGTAATGGCATGTAGAAAGCTGAGACTGGTGTATCAAAGGCCAATGACAATAGCTA
CATGATATTTGAAGGGCCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis