Browse Element(s) Details


Os.23551.1.S1_at

Description gb:AK064473.1
DB_XREF= gi:32974491
TID=Os.23551.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H09, full insert sequence.
FL= gb:AK064473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0590010/11ternary complex factor MIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein
LOC_Os02g05900Os.23551.1.S1_at10/112+2928920..2932223ternary complex factor MIP1, putative, expressed
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed
LOC_Os02g05930NANA2+2945362..2949235Leucine Rich Repeat family protein, expressed
LOC_Os02g05940Os.49840.1.S1_at2/112+2952434..2955583Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23551.1.S1_at--242--2731Chr02:2931632..2931656 (25 bp)
AAGCAGCGGCTTCTTGGAGCACGCA
LOC_Os02g05900
Os.23551.1.S1_at--141--5951Chr02:2931648..2931672 (25 bp)
GAGCACGCAGTTTTACTGTTGTTGC
LOC_Os02g05900
Os.23551.1.S1_at--649--8791Chr02:2931667..2931690 (24 bp)
TGTTGCATTCGACTCAAAATTCCGG
LOC_Os02g05900
Os.23551.1.S1_at--802--9171Chr02:2931702..2931726 (25 bp)
TGCCTGACAGCAGTGGCTCCCAGAA
LOC_Os02g05900
Os.23551.1.S1_at--288--1691Chr02:2931726..2931750 (25 bp)
AGCCAGAACCCAAACGGACTTCGTG
LOC_Os02g05900
Os.23551.1.S1_at--661--1931Chr02:2931739..2931763 (25 bp)
ACGGACTTCGTGAGCTGTGTTCAGA
LOC_Os02g05900
Os.23551.1.S1_at--647--6851Chr02:2931787..2932080 (25 bp)
GTTTGGTCCTAGAACCATTTTCTTG
LOC_Os02g05900
Os.23551.1.S1_at--811--1071NONE
AGGGCGATACAAAGAGCTCCAGTAA
NONE
Os.23551.1.S1_at--147--6751Chr02:2931977..2932001 (25 bp)
GTTCATCTGGATCTCATTTTGTTCT
LOC_Os02g05900
Os.23551.1.S1_at--68--6731Chr02:2931997..2932021 (25 bp)
GTTCTGTTACTGTCTTTCCATAATG
LOC_Os02g05900
Os.23551.1.S1_at--922--10571Chr02:2932198..2932222 (25 bp)
TTCTATGAGATGCAACCTTTGTCAG
LOC_Os02g05900
Target Sequence 
AAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAG
CAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAACAAGTATGTTTG
GTCCTAGAACCATTTTCTTGCATACTGGACAATGCAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATAT
GATGCAACAAAGATGAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGA
TTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTTACTGTCTTTCCATAATGAAGATAACC
TTTTGNTATTTTTTGNTTTCGACATACCTTTTTTTGGGGNTANAGTTCTTGATCTTGGTCAATTGATTTGTAAGNTGTGC
TCNAAATAANNNNNNTGTATAGNGCTTTTACCTCTTTATAATAATGNGAGNTACTTTNTCACTGNCTGGCTGGTACTGCT
GGAATAAGTAATCATTCTATGAGATGCAACCTTTGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis