Browse Element(s) Details


OsAffx.24118.1.S1_x_at

Description tigr:9630.m00515
TID=OsAffx.24118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerase Rpb1, domain 2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0588011/11RNA polymerase Rpb1, domain 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein
LOC_Os02g05880Os.15979.1.A1_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880OsAffx.24118.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05880Os.53690.1.S1_x_at11/112+2904356..2919107RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os02g05890Os.9792.1.S1_at11/112+2922459..2925071expressed protein
LOC_Os02g05900Os.23551.1.S1_at10/112+2928920..2932223ternary complex factor MIP1, putative, expressed
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24118.1.S1_x_at--577--8391Chr02:2905878..2905902 (25 bp)
GGCGACACTTTGACCTAACAGCTGA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--176--8071Chr02:2905837..2905861 (25 bp)
GGAGAAATTGAACCCACTGTGCTGA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--99--731Chr02:2905559..2905583 (25 bp)
ATGTTCTTGAACACCACCCTGAGAA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--225--2891Chr02:2905527..2905551 (25 bp)
AAGGTGTCTGGTGAAATCGATCACA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--437--8811Chr02:2905366..2905390 (25 bp)
TGTTCCAGGATAGTCGGTGCTTGTT
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--1125--7731Chr02:2905338..2905362 (25 bp)
GGTGTCTTCAGATGGAACTCGGTCA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--246--5471Chr02:2905324..2905348 (25 bp)
GAACTCGGTCAGATTTCTCCTATTT
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--335--7391Chr02:2905280..2905304 (25 bp)
GTGAGGAAGACCTACCCTGAGCATG
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--465--3311Chr02:2905162..2905186 (25 bp)
CACAGTCTACTGCAGTTGATACCCA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--572--1811Chr02:2905142..2905166 (25 bp)
ACCCAGGAGGGCACTTCACAGCAGA
LOC_Os02g05880
OsAffx.24118.1.S1_x_at--523--1591Chr02:2905056..2905080 (25 bp)
AGCTCCTCCAGCAGACGATGGATTG
LOC_Os02g05880
Target Sequence 
GGCGACACTTTGACCTAACAGCTGAGGAGGAAAAGATTCTAGGAGAAATTGAACCCACTGTGCTGAGCATCAGAAAGATT
TTCCGTGAATCAATTGATAGCATAAAACTTTCTCCGGAAGACGAAAAATTCATCAAAGAGAATGTTCTTGAACACCACCC
TGAGAAACAATCAAAGGTGTCTGGTGAAATCGATCACATAATGGTTGACAAGCACCAAGTGTTCCAGGATAGTCGGTGCT
TGTTTGTGGTGTCTTCAGATGGAACTCGGTCAGATTTCTCCTATTTAAAATGCATGGAGAATTTTGTGAGGAAGACCTAC
CCTGAGCATGGGGACTCATTCTGCAAGAAGTATTTCAAGAGGCGCCGTGACCAACCACCAGCAGCTGATGGAGGCACAGC
ACCAGGCACTCCAGCTGGGGCTACACAGTCTACTGCAGTTGATACCCAGGAGGGCACTTCACAGCAGACCCAACCAGATA
TCGCAACCGCTCCAGCTGCAACTCAACAAGAGACTCTTCAAGACACTCCAGCTCCTCCAGCAGACGATGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24118.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis