Browse Element(s) Details


Os.24580.2.A1_at

Description gb:AK100376.1
DB_XREF= gi:32985585
TID=Os.24580.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084M06, full insert sequence.
FL= gb:AK100376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g059509/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05910NANA2+2933950..2937377Leucine Rich Repeat family protein, expressed
LOC_Os02g05920Os.49104.1.A1_at11/112+2938044..2941646Leucine Rich Repeat family protein, expressed
LOC_Os02g05930NANA2+2945362..2949235Leucine Rich Repeat family protein, expressed
LOC_Os02g05940Os.49840.1.S1_at2/112+2952434..2955583Leucine Rich Repeat family protein
LOC_Os02g05950Os.24580.2.A1_at9/112+2958769..2962175Leucine Rich Repeat family protein, expressed
LOC_Os02g05960Os.49783.1.S1_at11/112+2965238..2968656Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_s_at11/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05970OsAffx.2516.1.S1_at10/112+2971989..2975380Leucine Rich Repeat family protein, expressed
LOC_Os02g05980Os.49840.1.S1_at11/112+2978853..2982354Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24580.2.A1_at--972--331NONE
ATAACCCATGTCACAACCGAACTAG
NONE
Os.24580.2.A1_at--1053--1771NONE
ACCGAACTAGTTGGCACTCTGGGTT
NONE
Os.24580.2.A1_at--530--8711Chr02:2959113..2959137 (25 bp)
TGTCCCATGGGTACATAAGATGAGA
LOC_Os02g05950
Os.24580.2.A1_at--308--591Chr02:2959060..2959084 (25 bp)
ATCCAACACTTCGAGGCACAGGGTG
LOC_Os02g05950
Os.24580.2.A1_at--1085--4791Chr02:2959014..2959038 (25 bp)
GCTCGAAACTGCTTGCAAGTGTGTT
LOC_Os02g05950
Os.24580.2.A1_at--922--1091Chr02:2958997..2959021 (25 bp)
AGTGTGTTGACTGTAATCCTTTGAA
LOC_Os02g05950
Os.24580.2.A1_at--555--2531Chr02:2958966..2958990 (25 bp)
AACTATCATGGAAGTTGTCACTTGT
LOC_Os02g05950
Os.24580.2.A1_at--1004--6931Chr02:2958881..2958905 (25 bp)
GTAGTTCCCTATAAGTAGTACTTCT
LOC_Os02g05950
Os.24580.2.A1_at--701--8771Chr02:2958840..2958864 (25 bp)
TGTTATGTACAGCTTGGGACAGACT
LOC_Os02g05950
Os.24580.2.A1_at--229--7631Chr02:2958825..2958849 (25 bp)
GGGACAGACTAATATCATTTCAGCA
LOC_Os02g05950
Os.24580.2.A1_at--1069--6271Chr02:2958796..2958820 (25 bp)
GATGTTACTTGTTTTTGCTTAGTGA
LOC_Os02g05950
Target Sequence 
ATAACCCATGTCACAACCGAACTAGTTGGCACTCTGGGTTACATTCCCCCTGAATATGGGCAATCATGGGTTGCTACATT
GAGAGGTGATATGTATAGTTTCGGAGTGGTCCTGCTAGAGCTTCTCACGGGGAGGCGCCCTGTTCCAATCTTGTCTACAT
CAGAGGAACTTGTCCCATGGGTACATAAGATGAGATCAGAGGGAAAGCAGATTGAGGTGTTGGATCCAACACTTCGAGGC
ACAGGGTGCGAAGAGCAAATGCTAAAGGTGCTCGAAACTGCTTGCAAGTGTGTTGACTGTAATCCTTTGAAGAGGCCAAC
TATCATGGAAGTTGTCACTTGTNTGGACAGTATAGGCACTGAAATAAAGATATAAAATTATAAAAACATGATAGATAATT
TTGTAGTTCCCTATAAGTAGTACTTCTGACTTGTCTTATAGTTTGTTATGTACAGCTTGGGACAGACTAATATCATTTCA
GCAAATTGATGTTACTTGTTTTTGCTTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24580.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis