Browse Element(s) Details


Os.8459.1.S1_at

Description gb:AK061365.1
DB_XREF= gi:32971383
TID=Os.8459.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D04, full insert sequence.
FL= gb:AK103008.1 gb:AK061365.1 gb:AK060869.1 gb:AK104724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5751010/11BS14b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8459.1.S1_at--1053--1151NONE
AGTCAGCATTCTCAAGCGGTTGTCT
NONE
Os.8459.1.S1_at--252--291Chr02:35231442..35231465 (24 bp)
ATAACCGTATGCTAGACCGAATGGG
LOC_Os02g57510
Os.8459.1.S1_at--529--991Chr02:35231718..35231742 (25 bp)
AGGATGGGAACCCTCGTAGCATCAT
LOC_Os02g57510
Os.8459.1.S1_at--130--6971Chr02:35231733..35231757 (25 bp)
GTAGCATCATTCGTTGCGCTTTTTC
LOC_Os02g57510
Os.8459.1.S1_at--901--4871Chr02:35231750..35231774 (25 bp)
GCTTTTTCTGCTGGTATACTACTTG
LOC_Os02g57510
Os.8459.1.S1_at--239--7191Chr02:35231861..35231885 (25 bp)
GTCTGTGTCAATTTACCGTGGTGTC
LOC_Os02g57510
Os.8459.1.S1_at--210--6891Chr02:35231886..35231910 (25 bp)
GTATATACCTCCAATATCTCGCTGT
LOC_Os02g57510
Os.8459.1.S1_at--154--2211Chr02:35231966..35231990 (25 bp)
ACAACATGTTCGTCGTTTGCTCTGG
LOC_Os02g57510
Os.8459.1.S1_at--279--2291Chr02:35232012..35232036 (25 bp)
AAATGTTTCCTGCTGTGTTCTGTAA
LOC_Os02g57510
Os.8459.1.S1_at--448--2511Chr02:35232035..35232059 (25 bp)
AACATCTGTTTCTGTATGCGGTCAT
LOC_Os02g57510
Os.8459.1.S1_at--773--611Chr02:35232050..35232074 (25 bp)
ATGCGGTCATGCTATCTGTATTATA
LOC_Os02g57510
Target Sequence 
AGTCAGCATTCTCAAGCGGTTGTCTGGTGATATCCATGAAGAGGTGGAAACTCATAACCGTATGCTAGACCGAATGGGCA
ATGATATGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGGTTTTTGAGACCAAATCAAGTCGG
AGGATGGGAACCCTCGTAGCATCATTCGTTGCGCTTTTTCTGCTGGTATACTACTTGACCAGGTAGAAGAGGACCATGCA
TCACTTGCCTACTGTTGTGAAGCGATGTGAACTGGGTTGGGTACTCAAGAACACGCTGAAAATGTCTGTGTCAATTTACC
GTGGTGTCGTATATACCTCCAATATCTCGCTGTCATAAAGCAAAATATGTTGACCAGAATGTTTCTAACTCTGCACTGTG
TGAGGATTACAACATGTTCGTCGTTTGCTCTGGTGCTGTAATTACCTTTACAGAAAATGTTTCCTGCTGTGTTCTGTAAC
ATCTGTTTCTGTATGCGGTCATGCTATCTGTATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis