Browse Element(s) Details


OsAffx.3095.1.S1_at

Description tigr:9630.m05730
TID=OsAffx.3095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5752011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3095.1.S1_at--199--3731Chr02:35237375..35237399 (25 bp)
CTACGAGCGCCTGCCATTGGAGGAA
LOC_Os02g57520
OsAffx.3095.1.S1_at--820--10611Chr02:35237477..35237501 (25 bp)
TTCGGCGCTGCCAATGTTCAACCTG
LOC_Os02g57520
OsAffx.3095.1.S1_at--496--3191Chr02:35237488..35237512 (25 bp)
CAATGTTCAACCTGCCGCCGAGCAA
LOC_Os02g57520
OsAffx.3095.1.S1_at--514--4091Chr02:35237531..35237555 (25 bp)
CGACGGTTTCCCATGGGCGGCGCAC
LOC_Os02g57520
OsAffx.3095.1.S1_at--630--4551Chr02:35237560..35237584 (25 bp)
GCCCACCGTACTGATCGATGGCAAT
LOC_Os02g57520
OsAffx.3095.1.S1_at--480--1971Chr02:35237569..35237593 (25 bp)
ACTGATCGATGGCAATAGCATGGAA
LOC_Os02g57520
OsAffx.3095.1.S1_at--284--851Chr02:35237588..35237612 (25 bp)
ATGGAAGATTCATGGCGGCTAGCTC
LOC_Os02g57520
OsAffx.3095.1.S1_at--936--8371Chr02:35237637..35237661 (25 bp)
GGCGATGGCCTTCTCTTCTAGCAAG
LOC_Os02g57520
OsAffx.3095.1.S1_at--677--3651Chr02:35237646..35237670 (25 bp)
CTTCTCTTCTAGCAAGCTCTAGCTA
LOC_Os02g57520
OsAffx.3095.1.S1_at--109--10011Chr02:35237665..35237689 (25 bp)
TAGCTAGCTGCATGGTTACTGTTCC
LOC_Os02g57520
OsAffx.3095.1.S1_at--500--3871Chr02:35237683..35237707 (25 bp)
CTGTTCCATTGGAGGACATGATGAT
LOC_Os02g57520
Target Sequence 
CTACGAGCGCCTGCCATTGGAGGAAGAAGAGGAGGGCTCAGGCCCGCCCATGCCCGGCGGCGCCGAGCCCCTCATGGCCG
GCGGCCACGGCATCGCCGACCCTTCGGCGCTGCCAATGTTCAACCTGCCGCCGAGCAACGGGCTCGGCGGCGGCGGCGAC
GGTTTCCCATGGGCGGCGCACCCCCGCCCACCGTACTGATCGATGGCAATAGCATGGAAGATTCATGGCGGCTAGCTCGC
CGCCACCGGCAGCGGCGGCGGCGGCGATGGCCTTCTCTTCTAGCAAGCTCTAGCTAGCTGCATGGTTACTGTTCCATTGG
AGGACATGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis