Browse Element(s) Details


Os.10387.1.S1_a_at

Description gb:AF383877.1
DB_XREF= gi:14495345
TID=Os.10387.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10387 (NCBI UniGene Cluster)
DEF=Oryza sativa protein phosphatase mRNA, complete cds.
PROD=protein phosphatase
FL= gb:AF383877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5745010/11Serine/threonine protein phosphatase PP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10387.1.S1_a_at--517--1931Chr02:35203588..35203612 (25 bp)
ACGGATGTGCCTGATACTGGGTTAC
LOC_Os02g57450
Os.10387.1.S1_a_at--907--1951Chr02:35203573..35203597 (25 bp)
ACTGGGTTACTTTGTGATCTCCTTT
LOC_Os02g57450
Os.10387.1.S1_a_at--585--6351Chr02:35203543..35203567 (25 bp)
GATCCATCCAATGACGCACAAGGGT
LOC_Os02g57450
Os.10387.1.S1_a_at--411--7751Chr02:35203501..35203525 (25 bp)
GGTGTCTCATATACATTCGGGCCAG
LOC_Os02g57450
Os.10387.1.S1_a_at--744--6991Chr02:35203315..35203339 (25 bp)
GTACGAGTTCTTTGCTAACCGCCAA
LOC_Os02g57450
Os.10387.1.S1_a_at--102--10811Chr02:35203289..35203313 (25 bp)
TTGTAACAATATTCTCGGCCCCTAA
LOC_Os02g57450
Os.10387.1.S1_a_at--626--9431Chr02:35203275..35203299 (25 bp)
TCGGCCCCTAATTACTGTGGAGAAT
LOC_Os02g57450
Os.10387.1.S1_a_at--62--7511Chr02:35203166..35203190 (25 bp)
GTGGTTCCACGAATTCCAAATCCGG
LOC_Os02g57450
Os.10387.1.S1_a_at--1030--2271NONE
AAATCCGGCTTCAAGTCACTGAGAG
NONE
Os.10387.1.S1_a_at--1044--1611Chr02:35202124..35202148 (25 bp)
AGCTGTGATCTGATCTGCTGGCGCA
LOC_Os02g57450
Os.10387.1.S1_a_at--594--2971Chr02:35202025..35202049 (25 bp)
AATGTGTACAACTTTCCAGCCGATG
LOC_Os02g57450
Target Sequence 
ACGGATGTGCCTGATACTGGGTTACTTTGTGATCTCCTTTGGTCCGATCCATCCAATGACGCACAAGGGTGGGCTATGAA
TGATCGAGGTGTCTCATATACATTCGGGCCAGACAAAGTGTCTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTC
GAGCCCATCAGGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTAC
TGTGGAGAATTTGATAATGCTGGTGCCATGATGAGTGTAGATGATACACTGATGTGCTCTTTTCAAATACTAAAACCAGC
GAGGAAAATGTTGGGTGGTTCCACGAATTCCAAATCCGGCTTCAAGTCACTGAGAGGGTGGTGACGATGAGCAAAGCTGT
GATCTGATCTGCTGGCGCATGTCTTCTACAGCGGCTGCGACTAACCGGCATTTTCGCCTACAGCTCGGGTCCATAAACAG
CGAAGCAGATAGAAATGTGTACAACTTTCCAGCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10387.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis