Browse Element(s) Details


Os.33749.1.S1_at

Description gb:AK067374.1
DB_XREF= gi:32977392
TID=Os.33749.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105L14, full insert sequence.
FL= gb:AK099160.1 gb:AK067374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5743011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33749.1.S1_at--1063--3791Chr02:35194118..35194142 (25 bp)
CTCGCCATGATCTTTACGTGCAAGG
LOC_Os02g57430
Os.33749.1.S1_at--105--5171Chr02:35194099..35194123 (25 bp)
GCAAGGTTTGCGAGACCAGGTCTAT
LOC_Os02g57430
Os.33749.1.S1_at--776--8351Chr02:35194022..35194046 (25 bp)
GGCGGCTGCAATAATTTCCACCTGA
LOC_Os02g57430
Os.33749.1.S1_at--330--3111Chr02:35194010..35194034 (25 bp)
AATTTCCACCTGATCGCGGATAGGC
LOC_Os02g57430
Os.33749.1.S1_at--503--8191Chr02:35193965..35193989 (25 bp)
GGAAGCATCGAAGACTTTCTAGCCG
LOC_Os02g57430
Os.33749.1.S1_at--370--10511Chr02:35193896..35193920 (25 bp)
TTCACTCTTGAGGACTTGGTTGGGT
LOC_Os02g57430
Os.33749.1.S1_at--866--6491Chr02:35193755..35193779 (25 bp)
GATATCATGACTTCTCAAGGTGGAG
LOC_Os02g57430
Os.33749.1.S1_at--939--8031Chr02:35193734..35193758 (25 bp)
GGAGTAGTCCAACTTTTTGCACTTG
LOC_Os02g57430
Os.33749.1.S1_at--754--3131Chr02:35193678..35193702 (25 bp)
AATTCTCAACCTTGTGGCTAAGTCC
LOC_Os02g57430
Os.33749.1.S1_at--67--8771Chr02:35193629..35193653 (25 bp)
TGTAGTGGACACGACCCGATTATGT
LOC_Os02g57430
Os.33749.1.S1_at--932--5811Chr02:35193617..35193641 (25 bp)
GACCCGATTATGTACTAGGCTGTGT
LOC_Os02g57430
Target Sequence 
CTCGCCATGATCTTTACGTGCAAGGTTTGCGAGACCAGGTCTATGAAGATGGCGAGCAAGGAATCATATGAGAAAGGAGT
GGNTGGTCGCTCGTTGCGGCGGCTGCAATAATTTCCACCTGATCGCGGATAGGCTTGGCTGGTTTGGGGAGCCAGGAAGC
ATCGAAGACTTTCTAGCCGAACAAGGAGAGGAGGTGAAGAAAGGCTCAACAGATACTCTTAACTTCACTCTTGAGGACTT
GGTTGGGTNCTCAGGCTAATGATAAGGGCCCTTNTGATAAAAAATAGATTTCTCTTCAGTATGGCTTTGGGTCAAGACAA
CTTAAAAAAGGTTAACTCCTAAGGAAATCCACAAGTTTTTTACTCGATATCATGACTTCTCAAGGTGGAGTAGTCCAACT
TTTTGCACTTGTTAGTTCTGATGTTATTGCAGTGTAATTGTCAATTCTCAACCTTGTGGCTAAGTCCNCCGTGTGNCTTT
GGTAAATTTATTGTAGTGGACACGACCCGATTATGTACTAGGCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis