Browse Element(s) Details


OsAffx.4356.1.S1_at

Description tigr:9633.m01440
TID=OsAffx.4356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1618010/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16130NANA5+9097558..9100785transposon protein, putative, unclassified
LOC_Os05g16140OsAffx.4355.1.S1_at11/115+9107443..9109023hypothetical protein
LOC_Os05g16150OsAffx.14721.1.S1_at11/115+9115197..9116724hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_x_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160Os.49640.1.S1_at2/115+9117218..9117766hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_x_at8/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_at7/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.31529.1.S1_at2/115+9120092..9122787hypothetical protein
LOC_Os05g16180OsAffx.4356.1.S1_at10/115+9123860..9129102NB-ARC domain containing protein
LOC_Os05g16200OsAffx.4357.1.S1_at11/115+9130647..9134281NB-ARC domain containing protein
LOC_Os05g16210OsAffx.25135.2.S1_x_at11/115+9150447..9150986hypothetical protein
LOC_Os05g16210OsAffx.3516.1.S1_x_at2/115+9150447..9150986hypothetical protein
LOC_Os05g16220NANA5+9153029..9153328expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4356.1.S1_at--1030--7211Chr05:9126212..9126236 (25 bp)
GTCGACAAACTGTACCCTCAATATG
LOC_Os05g16180
OsAffx.4356.1.S1_at--203--3191Chr05:9126194..9126218 (25 bp)
CAATATGCATGGTTACTGCTCAAGA
LOC_Os05g16180
OsAffx.4356.1.S1_at--798--8951Chr05:9126015..9126039 (25 bp)
TGACACACTAAAGGACATCGGAATG
LOC_Os05g16180
OsAffx.4356.1.S1_at--1116--9971NONE
TACCACTTGCTGTAAAATACCTTGA
NONE
OsAffx.4356.1.S1_at--832--5491Chr05:9125186..9125210 (25 bp)
GAAAACTTAGTCAGGCTTCCTAATA
LOC_Os05g16180
OsAffx.4356.1.S1_at--759--4691Chr05:9125145..9125169 (25 bp)
GCGGCTTAGGCATCCAAGCCTTGTA
LOC_Os05g16180
OsAffx.4356.1.S1_at--267--931Chr05:9125105..9125129 (25 bp)
AGGCATCTTGACCTTTTAGGTGTAA
LOC_Os05g16180
OsAffx.4356.1.S1_at--870--6871Chr05:9125034..9125058 (25 bp)
GTATTTATGCGGGTTTCCTGCACAA
LOC_Os05g16180
OsAffx.4356.1.S1_at--427--3431Chr05:9124080..9124099 (20 bp)
CAGATGGCTTGCAGGATGTGAGTCC
LOC_Os05g16180
OsAffx.4356.1.S1_at--255--791Chr05:9124065..9124089 (25 bp)
ATGTGAGTCCTATGCACCTGGTGCT
LOC_Os05g16180
OsAffx.4356.1.S1_at--719--4271Chr05:9124049..9124073 (25 bp)
CCTGGTGCTGGACTGCAACTTAGAG
LOC_Os05g16180
Target Sequence 
GTCGACAAACTGTACCCTCAATATGCATGGTTACTGCTCAAGAAACAGGTAGCATCAAGTGATGATATGGAGGAGGTTGA
AATTGATGACACACTAAAGGACATCGGAATGGAAATAATAAAGAAATGTGGCGGATTACCACTTGCTGTAAAATACCTTG
AGATTGAGTTTGAAAACTTAGTCAGGCTTCCTAATAGCCTTGTAAAGCTAGGGCGGCTTAGGCATCCAAGCCTTGTAAAG
CTAGGGCGGCTTAGGCATCTTGACCTTTTAGGTGTAAGCATAAATGGCATACCCCGACAGTTCTGTGGATTGACAAATTT
GAGGTATTTATGCGGGTTTCCTGCACAAGCAGATGGCTTGCAGGATGTGAGTCCTATGCACCTGGTGCTGGACTGCAACT
TAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis