Browse Element(s) Details


OsAffx.4355.1.S1_at

Description tigr:9633.m01436
TID=OsAffx.4355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1614011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16100OsAffx.26918.1.S1_at10/115+9081715..9083805hypothetical protein
LOC_Os05g16110OsAffx.26918.2.S1_at11/115+9087209..9088855hypothetical protein
LOC_Os05g16120NANA5+9090785..9096940retrotransposon protein, putative, unclassified
LOC_Os05g16130NANA5+9097558..9100785transposon protein, putative, unclassified
LOC_Os05g16140OsAffx.4355.1.S1_at11/115+9107443..9109023hypothetical protein
LOC_Os05g16150OsAffx.14721.1.S1_at11/115+9115197..9116724hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_x_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160Os.49640.1.S1_at2/115+9117218..9117766hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_x_at8/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_at7/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.31529.1.S1_at2/115+9120092..9122787hypothetical protein
LOC_Os05g16180OsAffx.4356.1.S1_at10/115+9123860..9129102NB-ARC domain containing protein
LOC_Os05g16200OsAffx.4357.1.S1_at11/115+9130647..9134281NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4355.1.S1_at--420--5071Chr05:9108200..9108224 (25 bp)
GCAGCGTGACACAGCCCATGGAGAA
LOC_Os05g16140
OsAffx.4355.1.S1_at--880--6171Chr05:9108099..9108123 (25 bp)
GAGGAGCCATACGTGCTCAGTTCGT
LOC_Os05g16140
OsAffx.4355.1.S1_at--1153--8531Chr05:9108041..9108065 (25 bp)
TGGAGCACCGCGTGGCTCTTAGCCG
LOC_Os05g16140
OsAffx.4355.1.S1_at--228--8471Chr05:9108012..9108036 (25 bp)
TGGCCGCATGACCAAAACCTCTGCA
LOC_Os05g16140
OsAffx.4355.1.S1_at--138--1291Chr05:9107975..9107999 (25 bp)
AGATCGCAGCCATTGACCCACTGAA
LOC_Os05g16140
OsAffx.4355.1.S1_at--641--8931Chr05:9107962..9107986 (25 bp)
TGACCCACTGAACGCTGGCTGCATG
LOC_Os05g16140
OsAffx.4355.1.S1_at--63--8491Chr05:9107947..9107971 (25 bp)
TGGCTGCATGCACCTCGTAGTTGGC
LOC_Os05g16140
OsAffx.4355.1.S1_at--1038--8491Chr05:9107926..9107950 (25 bp)
TGGCAGGCAGGTTGTCTCCATAGAC
LOC_Os05g16140
OsAffx.4355.1.S1_at--361--5331Chr05:9107861..9107885 (25 bp)
GAAGTGATCCATCCGTGGATACACT
LOC_Os05g16140
OsAffx.4355.1.S1_at--275--6471Chr05:9107844..9107868 (25 bp)
GATACACTTACACCATGTTTGCTCC
LOC_Os05g16140
OsAffx.4355.1.S1_at--1056--4191Chr05:9107514..9107817 (25 bp)
CCCCGTGCAGAAACTCTTTCAAGGA
LOC_Os05g16140
Target Sequence 
GCAGCGTGACACAGCCCATGGAGAAGGAGCGCCGGGAGCTGCGCAGGTTCCGCCGCGTCGGCGTCAGCGAGGGGAGGCTG
CGCTACGCCGAGGTGTCCCAGGAGGAGCCATACGTGCTCAGTTCGTTCGCCCTCGACGACGACGGCGGCGGGTGGACGCT
GGAGCACCGCGTGGCTCTTAGCCGGCTCTGGCCGCATGACCAAAACCTCTGCAAGAACACGCCGCAGATCGCAGCCATTG
ACCCACTGAACGCTGGCTGCATGCACCTCGTAGTTGGCAGGCAGGTTGTCTCCATAGACATGGACAATGGGGATTTGCTT
GGGTGCACGCTGGGAGGTGGAAGTGATCCATCCGTGGATACACTTACACCATGTTTGCTCCCTCCGTGGCTTGCATCGTG
CCGGATCCCCCGTGCAGAAACTCTTTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis