Browse Element(s) Details


OsAffx.26918.1.S1_at

Description tigr:9633.m01432
TID=OsAffx.26918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1610010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16080OsAffx.31811.2.S1_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.2.S1_x_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.11549.1.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.4.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080Os.31535.1.A1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.3.S1_x_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16090NANA5+9073431..9074016hypothetical protein
LOC_Os05g16100OsAffx.26918.1.S1_at10/115+9081715..9083805hypothetical protein
LOC_Os05g16110OsAffx.26918.2.S1_at11/115+9087209..9088855hypothetical protein
LOC_Os05g16120NANA5+9090785..9096940retrotransposon protein, putative, unclassified
LOC_Os05g16130NANA5+9097558..9100785transposon protein, putative, unclassified
LOC_Os05g16140OsAffx.4355.1.S1_at11/115+9107443..9109023hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26918.1.S1_at--1095--3011Chr05:9082888..9082912 (25 bp)
AATGCCCAGCGAAGATCTACTAGTA
LOC_Os05g16100
OsAffx.26918.1.S1_at--678--2851Chr05:9082862..9082886 (25 bp)
AAGTGCAGAGTATTCATCGGCGCGT
LOC_Os05g16100
OsAffx.26918.1.S1_at--16--9391Chr05:9082808..9082832 (25 bp)
TCGAGGTGTCCGACAAGGATCCTTT
LOC_Os05g16100
OsAffx.26918.1.S1_at--232--4791Chr05:9082775..9082799 (25 bp)
GCTCCTTCGCGCTTGACGACGATGG
LOC_Os05g16100
OsAffx.26918.1.S1_at--843--8011Chr05:9082692..9082716 (25 bp)
GGAGGACCAGAGGACACCCCGCGAA
LOC_Os05g16100
OsAffx.26918.1.S1_at--685--2391Chr05:9082648..9082672 (25 bp)
AAACTCGAGCGTCATTTGTGTCATC
LOC_Os05g16100
OsAffx.26918.1.S1_at--460--2891Chr05:9082584..9082608 (25 bp)
AAGGTGCTTGGGTCTTCGCCGATAG
LOC_Os05g16100
OsAffx.26918.1.S1_at--82--7751Chr05:9082554..9082578 (25 bp)
GGTGAAGGCTCACCCTGGTTTATCA
LOC_Os05g16100
OsAffx.26918.1.S1_at--304--7871Chr05:9082538..9082562 (25 bp)
GGTTTATCACCTCTATCCTTAAATC
LOC_Os05g16100
OsAffx.26918.1.S1_at--897--2431NONE
AAAATCCCCGCTGCTGGAACATCTG
NONE
OsAffx.26918.1.S1_at--712--7711Chr05:9081757..9081781 (25 bp)
GGGTGATGCCAAAAGCAAGACCTTA
LOC_Os05g16100
Target Sequence 
AATGCCCAGCGAAGATCTACTAGTAGAAGTGCAGAGTATTCATCGGCGCGTGGGGGTCAGTGAGGGGAGGCTGCGCTATG
TCGAGGTGTCCGACAAGGATCCTTTCGTGCTCAGCTCCTTCGCGCTTGACGACGATGGCGGCAGCTGGACGCTGGAGCAC
CGTGTGGCGCTTGGTCGAATCTGCGAGGTGAAGGGAGGAGGACCAGAGGACACCCCGCGAATTGCCGTCATTGACCCACT
AAACTCGAGCGTCATTTGTGTCATCGTTGGCAAACATGTTCTTTCTGTAGACATGGAGATGGGGAAGGTGCTTGGGTCTT
CGCCGATAGAAGAAGGTGAAGGCTCACCCTGGTTTATCACCTCTATCCTTAAATCATGTGTGCTCCCACCGTGGCTTGCA
TCAAGCAAAATCCCCGCTGCTGGAACATCTGCGAGCAACAAGGGTGATGCCAAAAGCAAGACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis