Browse Element(s) Details


Os.5417.3.S1_x_at

Description gb:AK068171.1
DB_XREF= gi:32978189
TID=Os.5417.3
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129E13, full insert sequence.
FL= gb:AK068171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4671011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46670OsAffx.23691.1.S1_at10/111+26903393..26904848hypothetical protein
LOC_Os01g46680OsAffx.23692.1.S1_at11/111+26908099..26908314hypothetical protein
LOC_Os01g46690OsAffx.2258.1.S1_at11/111+26910144..26912751hypothetical protein
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46720Os.27759.1.S2_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.27759.1.S1_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.9016.1.S1_x_at2/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46730OsAffx.2259.1.S1_at11/111+26946310..26947082hypothetical protein
LOC_Os01g46740OsAffx.23693.1.S1_at10/111+26949677..26951259hypothetical protein
LOC_Os01g46750Os.19404.1.S1_at11/111+26955766..26963795AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5417.3.S1_x_at--111--2791Chr01:26929344..26929368 (25 bp)
AAGAGATCGTCTCCGGCATGCATGC
LOC_Os01g46710
Os.5417.3.S1_x_at--527--7771Chr01:26929253..26929277 (25 bp)
GGTGAACGCATCTAGCCTTGAGCTG
LOC_Os01g46710
Os.5417.3.S1_x_at--515--2851Chr01:26929173..26929197 (25 bp)
TAAGTCGGATACCTAATTCCCCAGA
LOC_Os01g46710
Os.5417.3.S1_x_at--1086--9231Chr01:26929111..26929135 (25 bp)
TCCTTTCTCATTTTCTTTTGTCCGA
LOC_Os01g46710
Os.5417.3.S1_x_at--263--4551Chr01:26929079..26929103 (25 bp)
GCGCCTTCTGCCTAGAGTTATTTTG
LOC_Os01g46710
Os.5417.3.S1_x_at--251--171Chr01:26929060..26929084 (25 bp)
ATTTTGAGTTGCACCGTTCTTTTTG
LOC_Os01g46710
Os.5417.3.S1_x_at--941--1331Chr01:26929018..26929042 (25 bp)
AGAGTGTTTGCCGTGAGCTTCCATG
LOC_Os01g46710
Os.5417.3.S1_x_at--965--611Chr01:26928996..26929020 (25 bp)
ATGCTGTCCGGAACTTGACGTGCAC
LOC_Os01g46710
Os.5417.3.S1_x_at--69--7871Chr01:26928938..26928962 (25 bp)
GGTATCTGTGTCATCAGCAGGCACT
LOC_Os01g46710
Os.5417.3.S1_x_at--313--10331Chr01:26928901..26928925 (25 bp)
TTTCAGCAGTACTCCCATGTTTTTC
LOC_Os01g46710
Os.5417.3.S1_x_at--70--5111Chr01:26928871..26928895 (25 bp)
GCACGTGCTACGTTGCTAGTATCCG
LOC_Os01g46710
Target Sequence 
AAGAGATCGTCTCCGGCATGCATGCAGGCATTGAGAAAGGTATGGAAGGAGAGACTGATAATTTAATTGATGATAACCCT
GGGGATGGTGAGGTGAACGCATCTAGCCTTGAGCTGGATGTTGCAAGTGGCGCTGATGATTGTGAAGCCTTGGTGGAGAG
TAGGGTAAATTTAAGTCGGATACCTAATTCCCCAGAAAGTACACATTGAAACTCCTTTCATTTCATTTTTAATTCCTTTC
TCATTTTCTTTTGTCCGAGGGTGTTGCGCCTTCTGCCTAGAGTTATTTTGAGTTGCACCGTTCTTTTTGCCTCCCGTTGT
TGCTCTAGAGTGTTTGCCGTGAGCTTCCATGCTGTCCGGAACTTGACGTGCACATGGAGTGTAGAATGCAGGAGCTGCAG
ATGGGGGGTATCTGTGTCATCAGCAGGCACTATTGCCATGCCCTTTCAGCAGTACTCCCATGTTTTTCTGCTCGCACGTG
CTACGTTGCTAGTATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5417.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis