Browse Element(s) Details


Os.54200.1.S1_at

Description gb:AK102485.1
DB_XREF= gi:32987694
TID=Os.54200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094M06, full insert sequence.
FL= gb:AK102485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1034011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10320Os.25559.1.S1_at11/1112+5454291..5455810uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os12g10330Os.54234.1.S1_at11/1112+5468030..5470355NB-ARC domain containing protein, expressed
LOC_Os12g10340Os.54200.1.S1_at11/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10340OsAffx.31684.1.S1_at1/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10350OsAffx.31679.1.S1_at11/1112+5481289..5481552hypothetical protein
LOC_Os12g10360OsAffx.31681.1.S1_at11/1112+5485083..5487011NB-ARC domain containing protein
LOC_Os12g10370OsAffx.19590.1.S1_at11/1112+5488242..5488692hypothetical protein
LOC_Os12g10380NANA12+5496679..5497035hypothetical protein
LOC_Os12g10390OsAffx.31681.1.S1_at11/1112+5497827..5499710NB-ARC domain containing protein
LOC_Os12g10400OsAffx.31682.1.S1_at11/1112+5500645..5505129NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54200.1.S1_at--479--5571Chr12:5475745..5475769 (25 bp)
GAAAGTCCTTCTTTGAACTCAAGTT
LOC_Os12g10340
Os.54200.1.S1_at--144--5211Chr12:5475871..5475895 (25 bp)
GAATTGCTGATGTTGCTAGCTCCAA
LOC_Os12g10340
Os.54200.1.S1_at--341--8971Chr12:5475901..5475925 (25 bp)
TGAAACCAACAGTACGCCACCTATC
LOC_Os12g10340
Os.54200.1.S1_at--631--4411Chr12:5475916..5475940 (25 bp)
GCCACCTATCTGTTGCTGGTATTGA
LOC_Os12g10340
Os.54200.1.S1_at--292--10771Chr12:5475937..5475961 (25 bp)
TTGATGGTTTTCCAGTCGACGCCAT
LOC_Os12g10340
Os.54200.1.S1_at--878--5791Chr12:5475954..5475978 (25 bp)
GACGCCATCAAAAGTTTGTCCCAGT
LOC_Os12g10340
Os.54200.1.S1_at--1006--6851Chr12:5475967..5475991 (25 bp)
GTTTGTCCCAGTTCAAAAATCTGCG
LOC_Os12g10340
Os.54200.1.S1_at--185--9151Chr12:5476075..5476099 (25 bp)
TGCGTGTCGTGCAATACCACATGTT
LOC_Os12g10340
Os.54200.1.S1_at--246--1711Chr12:5476090..5476114 (25 bp)
ACCACATGTTCAGTAGATCCCGATT
LOC_Os12g10340
Os.54200.1.S1_at--353--991Chr12:5476101..5476125 (25 bp)
AGTAGATCCCGATTCCCTGGAAAAG
LOC_Os12g10340
Os.54200.1.S1_at--249--5091Chr12:5476139..5476163 (25 bp)
GCACCTTCGTTATGTAAGTGTCTCA
LOC_Os12g10340
Target Sequence 
GAAAGTCCTTCTTTGAACTCAAGTTGAGAAACTTCCGTTTCGGAAGGAACGAATGCCATGAATATTTTGTGATGCATGAC
TTAATGCATGATTTGGCAACATGGGTTTCTTCAGGTGAATGTGCAAGAATTGCTGATGTTGCTAGCTCCAAGAAGCTGAA
ACCAACAGTACGCCACCTATCTGTTGCTGGTATTGATGGTTTTCCAGTCGACGCCATCAAAAGTTTGTCCCAGTTCAAAA
ATCTGCGCACCATTATCATTGAAGATTGCCATAATATCCAGGATGACACTTCACGGGAAGTGGAGAAAGTTATAGAAAGC
TTAAAAGCCCTGCGTGTCGTGCAATACCACATGTTCAGTAGATCCCGATTCCCTGGAAAAGAAGCTAATCTAAAGCACCT
TCGTTATGTAAGTGTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis