Browse Element(s) Details


Os.54234.1.S1_at

Description gb:AK102672.1
DB_XREF= gi:32987881
TID=Os.54234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102B20, full insert sequence.
FL= gb:AK102672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1033011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10310OsAffx.10633.1.S1_at3/1112+5442275..5446785retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10320Os.25559.1.S1_at11/1112+5454291..5455810uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os12g10330Os.54234.1.S1_at11/1112+5468030..5470355NB-ARC domain containing protein, expressed
LOC_Os12g10340Os.54200.1.S1_at11/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10340OsAffx.31684.1.S1_at1/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10350OsAffx.31679.1.S1_at11/1112+5481289..5481552hypothetical protein
LOC_Os12g10360OsAffx.31681.1.S1_at11/1112+5485083..5487011NB-ARC domain containing protein
LOC_Os12g10370OsAffx.19590.1.S1_at11/1112+5488242..5488692hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54234.1.S1_at--1149--5391Chr12:5468492..5468516 (25 bp)
GAAGCTGCGCACAGTCATCATTGAA
LOC_Os12g10330
Os.54234.1.S1_at--484--5471Chr12:5468414..5468438 (25 bp)
GAACTCAAAATCCTTGCGTCTGTTA
LOC_Os12g10330
Os.54234.1.S1_at--348--6271Chr12:5468372..5468396 (25 bp)
GATGTGCCATTTACCTGACAGACTT
LOC_Os12g10330
Os.54234.1.S1_at--839--5691Chr12:5468352..5468376 (25 bp)
GACTTTCTAGTCTGATGCACCTTCG
LOC_Os12g10330
Os.54234.1.S1_at--1092--10611Chr12:5468331..5468355 (25 bp)
TTCGTCACGTCAAGATCTCAATGCT
LOC_Os12g10330
Os.54234.1.S1_at--573--771Chr12:5468180..5468204 (25 bp)
ATGTGTTGCCATCTGCAATCTGTAA
LOC_Os12g10330
Os.54234.1.S1_at--874--10071Chr12:5468155..5468179 (25 bp)
TAGTGGTGTCCATTTGCTTTTGCAA
LOC_Os12g10330
Os.54234.1.S1_at--174--5151Chr12:5468134..5468158 (25 bp)
GCAACTACTGTTGTCCCTGGAGGAA
LOC_Os12g10330
Os.54234.1.S1_at--329--5551Chr12:5468112..5468136 (25 bp)
GAAACTGTTTTGCTTCTCTGTATCA
LOC_Os12g10330
Os.54234.1.S1_at--1072--6891Chr12:5468093..5468117 (25 bp)
GTATCATTGTATCGCTTGTTCGGGA
LOC_Os12g10330
Os.54234.1.S1_at--190--6531Chr12:5468070..5468094 (25 bp)
GATTTGTAGTCTGTATCGCTTGAAA
LOC_Os12g10330
Target Sequence 
GAAGCTGCGCACAGTCATCATTGAAGATTGTGGCAATGTCGAGGAGGACGTGGTATACGCAATGGCAGAGGTCGTGAAGA
ACTCAAAATCCTTGCGTCTGTTAGAATGTTCTCTGTTCAAGATGTGCCATTTACCTGACAGACTTTCTAGTCTGATGCAC
CTTCGTCACGTCAAGATCTCAATGCTTTAAAACACATAAGGCAGCACTGCCTTAGGGGATAAACTGGGATCATTGAAGAA
GTAAGGCTAAAAAAAAGTGATGCTGTATGATAAACCATATTATTTCTGTATGTTGTCCACATAAATGGCTAAATGTGTTG
CCATCTGCAATCTGTAATAGTGGTGTCCATTTGCTTTTGCAACTACTGTTGTCCCTGGAGGAAACTGTTTTGCTTCTCTG
TATCATTGTATCGCTTGTTCGGGATTTGTAGTCTGTATCGCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis