Browse Element(s) Details


Os.54212.1.S1_at

Description gb:AK103822.1
DB_XREF= gi:32989031
TID=Os.54212.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147H24, full insert sequence.
FL= gb:AK102559.1 gb:AK103822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3959011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39570Os.47463.1.S1_x_at6/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39570Os.14491.2.S1_x_at4/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39580NANA5+23156756..23157406Streptomyces cyclase/dehydrase family protein
LOC_Os05g39590Os.54212.1.S1_at11/115+23164500..23166848AP2 domain containing protein, expressed
LOC_Os05g39600Os.53362.1.S1_at11/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39600Os.53362.2.S1_at6/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39610Os.10500.1.S1_at11/115+23171743..23174288Exo70 exocyst complex subunit family protein, expressed
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009744biological_processresponse to sucrose stimulus
GO:0009747biological_processhexokinase-dependent signaling
GO:0009749biological_processresponse to glucose stimulus
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54212.1.S1_at--975--7371Chr05:23166638..23166662 (25 bp)
GTGAGAGATTTTCCAGTAGATGAGT
LOC_Os05g39590
Os.54212.1.S1_at--9--6311Chr05:23166656..23166680 (25 bp)
GATGAGTTAGCTTTCGTTTTGCTTA
LOC_Os05g39590
Os.54212.1.S1_at--264--4891Chr05:23166665..23166689 (25 bp)
GCTTTCGTTTTGCTTAGCTGATAGC
LOC_Os05g39590
Os.54212.1.S1_at--647--9991Chr05:23166679..23166703 (25 bp)
TAGCTGATAGCCATGTAGACCGTTA
LOC_Os05g39590
Os.54212.1.S1_at--63--6911Chr05:23166693..23166717 (25 bp)
GTAGACCGTTAACAACGCTTATATG
LOC_Os05g39590
Os.54212.1.S1_at--1044--2191Chr05:23166704..23166728 (25 bp)
ACAACGCTTATATGTAGTTTACTAA
LOC_Os05g39590
Os.54212.1.S1_at--721--10191Chr05:23166734..23166758 (25 bp)
TATTAGTCTTCATTTTGCATTAGGA
LOC_Os05g39590
Os.54212.1.S1_at--873--6891Chr05:23166763..23166787 (25 bp)
GTATAACTGATAGCATTCAAATGTA
LOC_Os05g39590
Os.54212.1.S1_at--443--5451Chr05:23166795..23166819 (25 bp)
GAACTGAAACCAAAATACTACTATA
LOC_Os05g39590
Os.54212.1.S1_at--34--2031Chr05:23166811..23166835 (25 bp)
ACTACTATATTTATCCGGAGAGAAT
LOC_Os05g39590
Os.54212.1.S1_at--99--9291Chr05:23166824..23166848 (25 bp)
TCCGGAGAGAATTGCACTTTGGACT
LOC_Os05g39590
Target Sequence 
GTGAGAGATTTTCCAGTAGATGAGTTAGCTTTCGTTTTGCTTAGCTGATAGCCATGTAGACCGTTAACAACGCTTATATG
TAGTTTACTAATATATTATTAGTCTTCATTTTGCATTAGGAAAAAGTATAACTGATAGCATTCAAATGTAAATAGTAGAA
CTGAAACCAAAATACTACTATATTTATCCGGAGAGAATTGCACTTTGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis