Browse Element(s) Details


Os.5424.1.S1_at

Description gb:CB671807
DB_XREF= gi:29675532
DB_XREF=OSJNEe05I20.r
CLONE=OSJNEe05I20
TID=Os.5424.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5424 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_180478.1 (A.thaliana) putative pumilioMpt5 family RNA-binding protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5739011/11Pumilio/Mpt5 family RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57370Os.8132.1.S1_at11/112+35149792..35152853Zinc finger DHHC domain containing protein 15 homolog, putative, expressed
LOC_Os02g57380Os.54214.1.S1_at11/112+35153098..35155675Thioredoxin-like 8, chloroplast precursor, putative, expressed
LOC_Os02g57390Os.5424.1.S1_at11/112+35157621..35162467Pumilio/Mpt5 family RNA-binding protein, putative, expressed
LOC_Os02g57400Os.11176.1.S1_at11/112+35164546..351693852-phosphoglycerate kinase, putative, expressed
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5424.1.S1_at--217--1411Chr02:35161781..35161805 (25 bp)
AGACTTGTGATGACCAGAACCGTGA
LOC_Os02g57390
Os.5424.1.S1_at--194--2791Chr02:35161846..35161870 (25 bp)
AAGAGATACACCTATGGGAAACATA
LOC_Os02g57390
Os.5424.1.S1_at--10--5531Chr02:35161863..35161887 (25 bp)
GAAACATATTGTTGCACGGGTTGAG
LOC_Os02g57390
Os.5424.1.S1_at--62--1931Chr02:35161878..35161902 (25 bp)
ACGGGTTGAGAAGCTTATTGCTGCA
LOC_Os02g57390
Os.5424.1.S1_at--611--2951Chr02:35162018..35162042 (25 bp)
AAGGCGCAGTGGAGTGTCTTCGTCA
LOC_Os02g57390
Os.5424.1.S1_at--135--3651Chr02:35162035..35162059 (25 bp)
CTTCGTCATCTTCGTGAGATTGCAA
LOC_Os02g57390
Os.5424.1.S1_at--848--2251Chr02:35162093..35162117 (25 bp)
AAATAGCGAGGCTAGCCTTACCTGT
LOC_Os02g57390
Os.5424.1.S1_at--328--4451Chr02:35162107..35162131 (25 bp)
GCCTTACCTGTAGTCTTGTTGGGTT
LOC_Os02g57390
Os.5424.1.S1_at--361--8191Chr02:35162328..35162352 (25 bp)
GGAAGCAAGGACACCTGTAGATCCT
LOC_Os02g57390
Os.5424.1.S1_at--999--6931Chr02:35162344..35162368 (25 bp)
GTAGATCCTTTTGCCTTGAATTTCA
LOC_Os02g57390
Os.5424.1.S1_at--737--7871Chr02:35162380..35162404 (25 bp)
GGTTTCATGAGGTTTCATCTCTGTA
LOC_Os02g57390
Target Sequence 
AGACTTGTGATGACCAGAACCGTGAATTGNATCCTTTCACGTATCAAAGTACATTTGAATGCANCTAAAGAGATACACCT
ATGGGAAACATATTGTTGCACGGGTTGAGAAGCTTATTGCTGCAGGAGAAAGGCGCAGTGGAGTGTCTTCGTCATCTTCG
TGAGATTGCAATGGTTAGTTTGACAGAATAACACCTGTACAGACAAATAGCGAGGCTAGCCTTACCTGTAGTCTTGTTGG
GTTAAATCGGAAAAGCTAAGCTTTGAAAGCCTTTGATGTAAATAAAGGAGGGCCTCTGGAAATAAAAAGGAGAGAGTGTG
CTTGTTCTTAAGAAAGAAGCTGTATATTTGTACGTTTTTCCCCTCTTCGAGTAAGATAAAAAGAAGGAAGAAAGGCAAAG
CATGGAAGAAATTAGTGCAAAGATTTAGGATAGATGATGGGAAGCAAGGACACCTGTAGATCCTTTTGCCTTGAATTTCA
TCAGTGTATAAGGTTTCATGAGGTTTCATCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis