Browse Element(s) Details


Os.54250.1.S1_at

Description gb:AF005492.1
DB_XREF= gi:2253277
GEN=rf2a
TID=Os.54250.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54250 (NCBI UniGene Cluster)
DEF=Oryza sativa bZIP transcriptional activator RF2a (rf2a) mRNA, complete cds.
PROD=RF2a
FL= gb:AF005492.1 gb:AK102795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3406011/11Transcription factor RF2a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34080OsAffx.30133.1.S1_at11/119+20115557..20116111hypothetical protein
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54250.1.S1_at--910--8851Chr09:20094495..20094519 (25 bp)
TGATGAACTTCGGTGGCATGCCACA
LOC_Os09g34060
Os.54250.1.S1_at--325--2151Chr09:20094473..20094497 (25 bp)
ACACCAATTCGGAGGCAACCAGCAG
LOC_Os09g34060
Os.54250.1.S1_at--459--6691Chr09:20094446..20094470 (25 bp)
GTTCCAGAACAACCAGGCCATGCAA
LOC_Os09g34060
Os.54250.1.S1_at--467--4331Chr09:20094429..20094453 (25 bp)
CCATGCAATCTATGCTGGCAGCACA
LOC_Os09g34060
Os.54250.1.S1_at--441--8351Chr09:20094293..20094317 (25 bp)
GGCGGCACGAGACCTCAAGATGAAA
LOC_Os09g34060
Os.54250.1.S1_at--619--671Chr09:20094274..20094298 (25 bp)
ATGAAATCGCCGATGGGCGGCCAGA
LOC_Os09g34060
Os.54250.1.S1_at--585--1511Chr09:20094223..20094247 (25 bp)
AGCAGCGGCAACTGATGCGTCATTT
LOC_Os09g34060
Os.54250.1.S1_at--1068--4331Chr09:20094144..20094168 (25 bp)
CCATGGAGATGGTCTGTTTCATTGA
LOC_Os09g34060
Os.54250.1.S1_at--1020--3531Chr09:20094082..20094106 (25 bp)
CATCGGTAGGTTCAGGTTGGCTTCA
LOC_Os09g34060
Os.54250.1.S1_at--725--10871Chr09:20094066..20094090 (25 bp)
TTGGCTTCAGCTTCAGTCATACAGT
LOC_Os09g34060
Os.54250.1.S1_at--785--5351Chr09:20094024..20094048 (25 bp)
GAAGAGTTTATCTGTAGCTGGTTCA
LOC_Os09g34060
Target Sequence 
TGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATG
CTGGCAGCACACCAGCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCA
GCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATCGCCGATGGGCG
GCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGATGCGTCATTTACAAATTTACAAAAAAATTCCCC
AAAGTTTCGGTGTAAGGTTGTGGTTTAACAACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAAGAGTAG
TTATCATCATCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGTTGGGTGGATGTTCAGTTGAAGAGTTT
ATCTGTAGCTGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis