Browse Element(s) Details


Os.54251.1.S1_at

Description gb:AK102803.1
DB_XREF= gi:32988012
TID=Os.54251.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108G13, full insert sequence.
FL= gb:AK102803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g395302/11NPH3 family protein, expressed
LOC_Os05g517101/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54251.1.S1_at--1003--4611Chr07:23685987..23686011 (25 bp)
GCGAGTAGGATCCTGCGCATCTTCG
LOC_Os07g39530
Os.54251.1.S1_at--734--1091Chr07:23686115..23686139 (25 bp)
AGTGGCCTGTAGAACGAAGCACGCA
LOC_Os07g39530
Os.54251.1.S1_at--122--7891Chr07:23686248..23686272 (25 bp)
GGTTACTGGGTTATCACGTGACCAT
NONE
Os.54251.1.S1_at--73--8593Chr10:18781587..18781970 (25 bp)
TGGTTTTCACGATAACCACGTGGTT
NONE
Os.54251.1.S1_at--236--6771Chr07:23686296..23686320 (25 bp)
GTTACCATGGTAACCGTCAAACTGC
NONE
Os.54251.1.S1_at--1110--9111Chr07:23686318..23686342 (25 bp)
TGCGGGTGACGGTAACCCATACCAA
NONE
Os.54251.1.S1_at--307--5471Chr07:23686352..23686376 (25 bp)
GAACTGTGAACCTTGGCTACGAGTA
NONE
Os.54251.1.S1_at--8--8771Chr07:23686410..23686434 (25 bp)
TGTAGTCTGTACATATTGCTGTTGC
NONE
Os.54251.1.S1_at--87--10231Chr07:23686423..23686447 (25 bp)
TATTGCTGTTGCTGGCAATGCTGAA
NONE
Os.54251.1.S1_at--644--10471Chr07:23686469..23686493 (25 bp)
TTACTGTCAGGTGGCCTGGTCAGCA
NONE
Os.54251.1.S1_at--570--8591Chr07:23686485..23686509 (25 bp)
TGGTCAGCACTTTTTCTTAGGTCGA
NONE
Target Sequence 
GCGAGTAGGATCCTGCGCATCTTCGCGAGGCTGGCCGTGTTCGGGAGAGGGAGCAGGTCGTCGTCGTCGTCGTCGACGTC
GAGGGGGAAGCAGAGCAAGTGCAGGGCAAGTGCAGAGCAGCTCAGCTCAGTGGCCTGTAGAACGAAGCACGCAGCGAGGG
ACTGAGCGAGAGGTAAAAAAATGACGAGACATTTTTACTACACACGTGGAAAAGAAATTGCAGATCATACTGTAAACCCT
GCTATGTTTACAAAACCGTACGGTTACTGGGTTATCACGTGACCATGTGGTTTTCACGATAACCACGTGGTTACCATGGT
AACCGTCAAACTGCGGGTGACGGTAACCCATACCAAAGGTTTGATGAACTGTGAACCTTGGCTACGAGTAGTAGTGTGGT
AGTAGTATGTGAGCAGGGTACTATGTAGTCTGTACATATTGCTGTTGCTGGCAATGCTGAAGAATTGAAGAGTAGTTTGT
AGTTACTGTCAGGTGGCCTGGTCAGCACTTTTTCTTAGGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis