Browse Element(s) Details


Os.54278.1.S1_x_at

Description gb:AK103015.1
DB_XREF= gi:32988224
TID=Os.54278.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116M08, full insert sequence.
FL= gb:AK103015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3488011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34850Os.27616.1.S1_at10/1111+19918770..19922297Maf family protein, putative, expressed
LOC_Os11g34860Os.16466.1.S1_at11/1111+19924659..19930996ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os11g34870OsAffx.7294.1.S1_at10/1111+19932099..19935754expressed protein
LOC_Os11g34870OsAffx.19160.1.A1_at5/1111+19932099..19935754expressed protein
LOC_Os11g34880Os.54278.1.S1_x_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34880OsAffx.19161.1.S1_at11/1111+19943753..19949015NB-ARC domain containing protein, expressed
LOC_Os11g34890OsAffx.31300.1.S1_at11/1111+19951723..19952303hypothetical protein
LOC_Os11g34900OsAffx.19162.1.S1_at11/1111+19953150..19953499hypothetical protein
LOC_Os11g34910Os.10263.1.S1_at11/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.45902.1.A1_x_at4/1111+19954062..19959051expressed protein
LOC_Os11g34910Os.56372.1.S1_at1/1111+19954062..19959051expressed protein
LOC_Os11g34920Os.52499.1.S1_at11/1111+19959841..19963404stripe rust resistance protein Yr10, putative, expressed
LOC_Os11g34930NANA11+19965420..19969008retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54278.1.S1_x_at--526--2371Chr11:19945123..19945147 (25 bp)
AAACCTCTTTGTCATGTTGACTCAA
LOC_Os11g34880
Os.54278.1.S1_x_at--100--5371Chr11:19945066..19945090 (25 bp)
GAAGACAAATGTCCTCCTCAGTTGG
LOC_Os11g34880
Os.54278.1.S1_x_at--8--5571Chr11:19945016..19945040 (25 bp)
GAAATGTAGCGGAGTACCCTTGGCT
LOC_Os11g34880
Os.54278.1.S1_x_at--316--6991Chr11:19945003..19945027 (25 bp)
GTACCCTTGGCTATCATTACCATAG
LOC_Os11g34880
Os.54278.1.S1_x_at--187--5491Chr11:19944908..19944932 (25 bp)
GAACTTGTCGCATGTCAGGTCACTA
LOC_Os11g34880
Os.54278.1.S1_x_at--78--10511Chr11:19944868..19944892 (25 bp)
TTCAATTCATTTCCTGCCTACTCAA
LOC_Os11g34880
Os.54278.1.S1_x_at--1008--9711Chr11:19944847..19944871 (25 bp)
TCAAGCTTCCCACTATTACGTGTAT
LOC_Os11g34880
Os.54278.1.S1_x_at--515--211Chr11:19944775..19944799 (25 bp)
ATTTGCTTGTACTTGTTTCACCTAA
LOC_Os11g34880
Os.54278.1.S1_x_at--862--2891Chr11:19944752..19944776 (25 bp)
AAGGTATTTGAACCTGTCCAGGACA
LOC_Os11g34880
Os.54278.1.S1_x_at--158--10031Chr11:19944654..19944678 (25 bp)
TAGAAGATTTGCCATCCACCTTTGT
LOC_Os11g34880
Os.54278.1.S1_x_at--285--571Chr11:19944641..19944665 (25 bp)
ATCCACCTTTGTTCGACTAGGACAA
LOC_Os11g34880
Target Sequence 
AAACCTCTTTGTCATGTTGACTCAAGGAAATTGTTTAATCTGAGAATATTTGGTGCTGAAGACAAATGTCCTCCTCAGTT
GGCTGAATTGTCAGAGAGAATTTTGAAGAAATGTAGCGGAGTACCCTTGGCTATCATTACCATAGCGAGTATGTTGGCCA
GTAAAATAGAGAATGAAAACGCACATGAAGATGATTTCAAGCAGTTATCTATTTCGAACTTGTCGCATGTCAGGTCACTA
ATTTTTTTCAAAGGCTTCAATTCATTTCCTGCCTACTCAAGCTTCCCACTATTACGTGTATTGAACTTAAGTGGCTGCAA
GAAAGTGGATAACAATCACTGCAAGGATATTTGCTTGTACTTGTTTCACCTAAGGTATTTGAACCTGTCCAGGACATCTG
TTACAGAGATCCCGAGAGAGATCGAGAATCTACAATCTTTACAGGTACTGTGCATAAATGGCATCGAAATAGAAGATTTG
CCATCCACCTTTGTTCGACTAGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54278.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis