Browse Element(s) Details


Os.54291.1.S1_at

Description gb:AK103094.1
DB_XREF= gi:32988303
TID=Os.54291.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full insert sequence.
FL= gb:AK103094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4220010/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42160Os.26855.1.A1_at10/1111+24892696..24898109Leucine Rich Repeat family protein, expressed
LOC_Os11g42170OsAffx.19327.1.S1_s_at11/1111+24898612..24899505expressed protein
LOC_Os11g42170OsAffx.19327.1.S1_at11/1111+24898612..24899505expressed protein
LOC_Os11g42180Os.14491.2.S1_x_at2/1111+24904733..24907677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g42200Os.54291.1.S1_at10/1111+24922346..24924690Multicopper oxidase family protein, expressed
LOC_Os11g42210OsAffx.7383.1.S1_at11/1111+24925041..24927958hypothetical protein
LOC_Os11g42220Os.8440.1.S1_at11/1111+24931076..24933436Multicopper oxidase family protein, expressed
LOC_Os11g42230OsAffx.19328.1.S1_at11/1111+24933751..24935553F-box domain containing protein
LOC_Os11g42240OsAffx.31437.1.S1_at11/1111+24939519..24941477F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54291.1.S1_at--1025--1351Chr11:24923983..24924007 (25 bp)
AGAGCACCACGCTGATGCAGAGCGA
LOC_Os11g42200
Os.54291.1.S1_at--257--7571Chr11:24924057..24924081 (25 bp)
GGGCTCGGCAACTTTAACGCCAAGA
LOC_Os11g42200
Os.54291.1.S1_at--1059--10471Chr11:24924070..24924094 (25 bp)
TTAACGCCAAGAGGGATGTCAGGAA
LOC_Os11g42200
Os.54291.1.S1_at--681--2611NONE
AACCCGCAGCTAAGGAACACCGTGC
NONE
Os.54291.1.S1_at--572--2471Chr11:24924123..24924147 (25 bp)
AACACCGTGCAGGTTCCACGTGGCG
LOC_Os11g42200
Os.54291.1.S1_at--1025--91Chr11:24924159..24924183 (25 bp)
ATTCGCTTCGTCACAGACAATCCAG
LOC_Os11g42200
Os.54291.1.S1_at--702--8591Chr11:24924462..24924486 (25 bp)
TGGTCTGAGTCAACCATGAGGGTTT
LOC_Os11g42200
Os.54291.1.S1_at--426--7272Chr11:24924497..24924521 (25 bp)
GTCCAAATTTTTTACTGCTACGAGT
LOC_Os11g42200
Os.54291.1.S1_at--989--7931Chr11:24924543..24924567 (25 bp)
GGATTTGTAGTATGCATTGTATTGG
LOC_Os11g42200
Os.54291.1.S1_at--556--8611Chr11:24924565..24924589 (25 bp)
TGGTGATGATTATTCTTACTGTAAA
LOC_Os11g42200
Os.54291.1.S1_at--724--7851Chr11:24924611..24924635 (25 bp)
GGTATTCATTGTTGTAAGGTGGCAA
LOC_Os11g42200
Target Sequence 
AGAGCACCACGCTGATGCAGAGCGACTCCAACCCCATGCACCTCCATGGCTATGATGTCTTCCTCCTTGCACAGGGGCTC
GGCAACTTTAACGCCAAGAGGGATGTCAGGAAGTTCAACTACCACAACCCGCAGCTAAGGAACACCGTGCAGGTTCCACG
TGGCGGGTGGGCCGCCATTCGCTTCGTCACAGACAATCCAGGGATGTGGTACCTACACTGTCACTTTGAGTTCCACATCA
TTATGGGCATGGCGACGGCGTTCATCGTGGAGGATGGGCCGACACCAGAGACGAGCCTGCCTCCACCACCACCGGAGTTC
AAGAGATGTGGCAACAATGGTCTGAGTCAACCATGAGGGTTTTGAAGAGAAAGTCCAAATTTTTTACTGCTACGAGTAAT
AAAAAATAAAAAATGCATGGATTTGTAGTATGCATTGTATTGGTGATGATTATTCTTACTGTAAAAGAGATTTACTATTC
TTTTTTGGTATTCATTGTTGTAAGGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis