Browse Element(s) Details


Os.8440.1.S1_at

Description gb:AK066963.1
DB_XREF= gi:32976981
TID=Os.8440.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full insert sequence.
FL= gb:AK066963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4222011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42180Os.14491.2.S1_x_at2/1111+24904733..24907677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g42200Os.54291.1.S1_at10/1111+24922346..24924690Multicopper oxidase family protein, expressed
LOC_Os11g42210OsAffx.7383.1.S1_at11/1111+24925041..24927958hypothetical protein
LOC_Os11g42220Os.8440.1.S1_at11/1111+24931076..24933436Multicopper oxidase family protein, expressed
LOC_Os11g42230OsAffx.19328.1.S1_at11/1111+24933751..24935553F-box domain containing protein
LOC_Os11g42240OsAffx.31437.1.S1_at11/1111+24939519..24941477F-box domain containing protein
LOC_Os11g42250Os.17297.1.S1_at1/1111+24950559..24954980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42260Os.45173.1.S1_x_at1/1111+24955248..24957188retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8440.1.S1_at--697--1551Chr11:24932758..24932782 (25 bp)
AGCTTCAACGCCAAGAGGGACATCA
LOC_Os11g42220
Os.8440.1.S1_at--273--951Chr11:24932812..24932836 (25 bp)
AGGAACACCATATTGGTTCCCCGCG
LOC_Os11g42220
Os.8440.1.S1_at--828--2451Chr11:24933169..24933193 (25 bp)
AACAACTATGGCAAGGACCTTCCTC
LOC_Os11g42220
Os.8440.1.S1_at--965--6871Chr11:24933204..24933228 (25 bp)
GTATTCACTAGATAATGGCATTGCC
LOC_Os11g42220
Os.8440.1.S1_at--159--2771Chr11:24933262..24933286 (25 bp)
AAGACGTACATGTTAAATTCCAGCG
LOC_Os11g42220
Os.8440.1.S1_at--167--9851Chr11:24933275..24933299 (25 bp)
TAAATTCCAGCGTGCACAAGCCGGT
LOC_Os11g42220
Os.8440.1.S1_at--19--7791Chr11:24933297..24933321 (25 bp)
GGTCCAGGCCATGTGGTCATCAGCT
LOC_Os11g42220
Os.8440.1.S1_at--815--7811Chr11:24933311..24933335 (25 bp)
GGTCATCAGCTTCAGGCCAAGGTCA
LOC_Os11g42220
Os.8440.1.S1_at--1021--8431Chr11:24933325..24933349 (25 bp)
GGCCAAGGTCACGAAAAGCACAACT
LOC_Os11g42220
Os.8440.1.S1_at--393--5131Chr11:24933342..24933366 (25 bp)
GCACAACTTGATCATCTGCATCTTG
LOC_Os11g42220
Os.8440.1.S1_at--918--471Chr11:24933355..24933379 (25 bp)
ATCTGCATCTTGTTATGTACTCCCT
LOC_Os11g42220
Target Sequence 
AGCTTCAACGCCAAGAGGGACATCAGGAAGTTCAACTACCACAACCCTCAGCTCAGGAACACCATATTGGTTCCCCGCGG
TGGTTGGGCCGCCGTCCGCTTCATCACAGACAATCCAGGGATGTGGTACTTGCACTGTCACTTTGAGTTCCACATCATTA
TGGGCATGGCGACGGCGTTCATCGTGGAGGATGGGCCAACACCGGAGACGAGCCTGCCTCCACCGCCGCCGGAGTTCAAG
AGATGTGATGCCTCTTGAANCAACTTATCCTAACAACTATGGCAAGGACCTTCCTCCTNTTTGCCAGTATTCACTAGATA
ATGGCATTGCCTTTGGGGCATTTTATTCTTGTATTGCATTAGTTAAGACGTACATGTTAAATTCCAGCGTGCACAAGCCG
GTCCAGGCCATGTGGTCATCAGCTTCAGGCCAAGGTCACGAAAAGCACAACTTGATCATCTGCATCTTGTTATGTACTCC
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis