Browse Element(s) Details


OsAffx.7383.1.S1_at

Description tigr:9639.m03887
TID=OsAffx.7383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4221011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42180Os.14491.2.S1_x_at2/1111+24904733..24907677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42190NANA11+24907885..24914979transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g42200Os.54291.1.S1_at10/1111+24922346..24924690Multicopper oxidase family protein, expressed
LOC_Os11g42210OsAffx.7383.1.S1_at11/1111+24925041..24927958hypothetical protein
LOC_Os11g42220Os.8440.1.S1_at11/1111+24931076..24933436Multicopper oxidase family protein, expressed
LOC_Os11g42230OsAffx.19328.1.S1_at11/1111+24933751..24935553F-box domain containing protein
LOC_Os11g42240OsAffx.31437.1.S1_at11/1111+24939519..24941477F-box domain containing protein
LOC_Os11g42250Os.17297.1.S1_at1/1111+24950559..24954980retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7383.1.S1_at--702--5891Chr11:24925376..24925400 (25 bp)
GAGCTGGACCTACGGCACAATGCAC
LOC_Os11g42210
OsAffx.7383.1.S1_at--611--3191Chr11:24925359..24925383 (25 bp)
CAATGCACCGTGTTCCAGAAAGCGC
LOC_Os11g42210
OsAffx.7383.1.S1_at--513--4251Chr11:24925330..24925354 (25 bp)
CCGTGGCGATGGCAAACCTGTACAA
LOC_Os11g42210
OsAffx.7383.1.S1_at--698--9671Chr11:24925292..24925316 (25 bp)
TCACGATCTCTTCTACTACAATTCA
LOC_Os11g42210
OsAffx.7383.1.S1_at--652--451Chr11:24925237..24925261 (25 bp)
ATCTCTTCGTGCACCGGAGTTCGAA
LOC_Os11g42210
OsAffx.7383.1.S1_at--2--5431Chr11:24925215..24925239 (25 bp)
GAAGCCGAAGCTTTCTTTGGATGAC
LOC_Os11g42210
OsAffx.7383.1.S1_at--827--6151Chr11:24925172..24925196 (25 bp)
GAGGTTTCTGACATTGCTGTCTTGA
LOC_Os11g42210
OsAffx.7383.1.S1_at--37--9131Chr11:24925158..24925182 (25 bp)
TGCTGTCTTGAGTGGCCAATCGTTC
LOC_Os11g42210
OsAffx.7383.1.S1_at--99--4391Chr11:24925143..24925167 (25 bp)
CCAATCGTTCGAGTGCTTGCAGAGC
LOC_Os11g42210
OsAffx.7383.1.S1_at--290--2591Chr11:24925111..24925135 (25 bp)
AACGAGTGAGCTTGCAATTCCGAAT
LOC_Os11g42210
OsAffx.7383.1.S1_at--764--5851Chr11:24925076..24925100 (25 bp)
GACCAACTGCTTTGGATCGCAGCTT
LOC_Os11g42210
Target Sequence 
GAGCTGGACCTACGGCACAATGCACCGTGTTCCAGAAAGCGCAGCGCCGTGGCGATGGCAAACCTGTACAAGAGAGACTA
CTCATCACGATCTCTTCTACTACAATTCAGATATAAACTCGATTTCGACAAGTCCGTCGATCTCTTCGTGCACCGGAGTT
CGAAGCCGAAGCTTTCTTTGGATGACGATGATGAAGAAGAAGAAGAGGTTTCTGACATTGCTGTCTTGAGTGGCCAATCG
TTCGAGTGCTTGCAGAGCACTCTGAAACGAGTGAGCTTGCAATTCCGAATGGAGATCGAAGACCAACTGCTTTGGATCGC
AGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis