Browse Element(s) Details


Os.54295.1.S1_at

Description gb:AK103151.1
DB_XREF= gi:32988360
TID=Os.54295.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120O07, full insert sequence.
FL= gb:AK103151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2654010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein
LOC_Os09g26530OsAffx.30041.1.S1_at11/119+16029133..16031188expressed protein
LOC_Os09g26540Os.54295.1.S1_at10/119+16038121..16044462expressed protein
LOC_Os09g26550Os.5374.1.S1_s_at11/119+16048212..16058300PDZ domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54295.1.S1_at--620--6651Chr09:16039359..16039383 (25 bp)
GTTGATGACATTGTTCTCTACTCTC
LOC_Os09g26540
Os.54295.1.S1_at--779--3771Chr09:16038756..16038775 (20 bp)
CTCTGTCTCAGCTTACTTCGATATT
LOC_Os09g26540
Os.54295.1.S1_at--904--9811Chr09:16038725..16038749 (25 bp)
TAAAATGGCGGCTGCAATGCCCACG
LOC_Os09g26540
Os.54295.1.S1_at--1152--51Chr09:16038455..16038549 (25 bp)
ATTGCTTCAATAACAGATGGCCACT
LOC_Os09g26540
Os.54295.1.S1_at--623--211Chr09:16038398..16038422 (25 bp)
ATTTGAACTGATGAAGGCTGACCCT
LOC_Os09g26540
Os.54295.1.S1_at--656--2371Chr09:16038326..16038350 (25 bp)
AAACCTATCTGCCATTTGTCTTTGA
LOC_Os09g26540
Os.54295.1.S1_at--907--5411NONE
GAAGCCTCGGCTTTACTCCGAATTT
NONE
Os.54295.1.S1_at--1053--1451Chr09:16038270..16038294 (25 bp)
AGAAGTATCCCAATCCAACACAACA
LOC_Os09g26540
Os.54295.1.S1_at--653--2631Chr09:16038213..16038237 (25 bp)
AACCTCCTCAGACAGATTGCTTATG
LOC_Os09g26540
Os.54295.1.S1_at--615--7671Chr09:16038151..16038175 (25 bp)
GGGATTCTTGATCCATTTCAGGCAT
LOC_Os09g26540
Os.54295.1.S1_at--808--8671Chr09:16038127..16038151 (25 bp)
TGTGTTGACATGAAAAGGCCTCTTC
LOC_Os09g26540
Target Sequence 
GTTGATGACATTGTTCTCTACTCTCTGTCTCAGCTTACTTCGATATTTCTTGATAAAATGGCGGCTGCAATGCCCACGCA
GGATAAAGTGACTGTCCAGGCTGAAATACGAAGGCCCAGAGATAACACTAAGTTTGTTGCAAAGCTGAATATAGGAATTG
CTTCTGGTGAACACAACAATTGCTTCAATAACAGATGGCCACTGCAGTGAAAGAAGCAATATTTTGGTGATAAATATTTG
AACTGATGAAGGCTGACCCTTTTTTTTTTTGGGGAGAGAGAGGGGGGGGGGGGGGGTTAACATGCAAACCTATCTGCCAT
TTGTCTTTGAAGCCTCGGCTTTACTCCGAATTTCTTAAACCAGAAGTATCCCAATCCAACACAACACACATGCACTGTGG
CATTAATGGGTAGGATAAAACCTCCTCAGACAGATTGCTTATGGTTTTAATTTTCAGCTGTGAAGATGAGAACTTTCAAG
GGGATTCTTGATCCATTTCAGGCATGTGTTGACATGAAAAGGCCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis