Browse Element(s) Details


Os.54336.1.S1_at

Description gb:AK103476.1
DB_XREF= gi:32988685
TID=Os.54336.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130D21, full insert sequence.
FL= gb:AK103476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0342011/11PPR868-14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54336.1.S1_at--273--6351Chr02:1396545..1396569 (25 bp)
GATGCGAACATGATGCCCTAGTGTG
LOC_Os02g03420
Os.54336.1.S1_at--94--111Chr02:1396613..1396637 (25 bp)
ATTCGATGTGCCAGAAGTTCTCTTA
LOC_Os02g03420
Os.54336.1.S1_at--132--6531Chr02:1396714..1396738 (25 bp)
GATTTGCAGGTTTCTCCTAGACAAA
LOC_Os02g03420
Os.54336.1.S1_at--541--2171Chr02:1396742..1396766 (25 bp)
ACACCGGGTGCTCGAAATCTGGAAC
LOC_Os02g03420
Os.54336.1.S1_at--1020--5671Chr02:1396773..1396797 (25 bp)
GACTTCTCATGGTACGAATGCTTTC
LOC_Os02g03420
Os.54336.1.S1_at--200--8551Chr02:1396812..1396836 (25 bp)
TGGAGTTCTTCCTATATGTTGTGAC
LOC_Os02g03420
Os.54336.1.S1_at--174--5591Chr02:1396858..1396882 (25 bp)
GAAATTTCACAGGTCAGGCCTTTGT
LOC_Os02g03420
Os.54336.1.S1_at--701--3491Chr02:1396872..1396896 (25 bp)
CAGGCCTTTGTTATTGTGATCATGA
LOC_Os02g03420
Os.54336.1.S1_at--255--2271Chr02:1396903..1396927 (25 bp)
AAATCACTGCTAGTTGTCGTTCCAA
LOC_Os02g03420
Os.54336.1.S1_at--936--7031Chr02:1396949..1396973 (25 bp)
GTACAATCGCGCTTGATGTCCTAGA
LOC_Os02g03420
Os.54336.1.S1_at--1064--6891Chr02:1397075..1397099 (25 bp)
GTATCCAGTTTATAGTGCAGGTCTT
LOC_Os02g03420
Target Sequence 
GATGCGAACATGATGCCCTAGTGTGACAAGTGATAACTGTGCTGAGATGAACCAAACGAATTGAAAGTATTCGATGTGCC
AGAAGTTCTCTTATGAATCAAAATATTTGTAAAGAAAAAAGGCTCCTCCTTCTGACTCTTTCACCAAGACAAACTTGTGC
TATGGATTTGATTTGCAGGTTTCTCCTAGACAAAATTACACCGGGTGCTCGAAATCTGGAACTTATTAGACTTCTCATGG
TACGAATGCTTTCTTTTTATTCTTCAATGGAGTTCTTCCTATATGTTGTGACTGTTATTTTTGAAATGACACTGAAATTT
CACAGGTCAGGCCTTTGTTATTGTGATCATGATCTGCTAAATCACTGCTAGTTGTCGTTCCAACAAAGAAGAATTAAATA
TGCAGTACAATCGCGCTTGATGTCCTAGACAAGACCAGTTAAAATACATCAGATTAGGCAGTGCTGAAAGGGCTATTATT
TTCTATATATTGATACAGTCAATTTGAGTAGTATGAGAAACTAACTCAATGTATCCAGTTTATAGTGCAGGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis