Browse Element(s) Details


Os.54361.1.S1_at

Description gb:AK103659.1
DB_XREF= gi:32988868
TID=Os.54361.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135H03, full insert sequence.
FL= gb:AK103659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4608011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46040OsAffx.1646.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46040OsAffx.22722.1.S1_x_at1/1111+27357739..27363219retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g46050NANA11+27363866..27364828hypothetical protein
LOC_Os11g46060OsAffx.7424.1.S1_at11/1111+27375667..27376113hypothetical protein
LOC_Os11g46070Os.52601.1.S1_at11/1111+27377785..27384128NB-ARC domain containing protein, expressed
LOC_Os11g46080Os.54361.1.S1_at11/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46080OsAffx.5663.1.S1_at1/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative
LOC_Os11g46110NANA11+27403569..27403918hypothetical protein
LOC_Os11g46120Os.49932.1.S1_at10/1111+27404717..27407585expressed protein
LOC_Os11g46130OsAffx.7425.1.S1_at11/1111+27413256..27414209RGH1A, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54361.1.S1_at--468--2191Chr11:27393711..27393735 (25 bp)
ACAAAGTGGATGTTCTTCGCGGAAA
LOC_Os11g46080
Os.54361.1.S1_at--662--7211Chr11:27393761..27393785 (25 bp)
GTCGAGTCCGAATCCAGAATCAGCA
LOC_Os11g46080
Os.54361.1.S1_at--15--3431Chr11:27393863..27393887 (25 bp)
CAGAAAGATATAGTGCGTCCCCGCA
LOC_Os11g46080
Os.54361.1.S1_at--166--7631Chr11:27393894..27393918 (25 bp)
GGGAAATGTGCAGCGGGCTTCCATT
LOC_Os11g46080
Os.54361.1.S1_at--1124--9671Chr11:27393940..27393964 (25 bp)
TCACGTGGCCTGCAACTCAGACAAA
LOC_Os11g46080
Os.54361.1.S1_at--103--2271Chr11:27393992..27394016 (25 bp)
AAATCTCTAGTTCCAGAGTCGGGAA
LOC_Os11g46080
Os.54361.1.S1_at--658--71Chr11:27394056..27394080 (25 bp)
ATTGCTACAATGATATGCCTGCCGA
LOC_Os11g46080
Os.54361.1.S1_at--6--271Chr11:27394068..27394092 (25 bp)
ATATGCCTGCCGAGCTGAGGACTTG
LOC_Os11g46080
Os.54361.1.S1_at--1144--8871Chr11:27394083..27394107 (25 bp)
TGAGGACTTGCTCTCTGTACCTGAG
LOC_Os11g46080
Os.54361.1.S1_at--428--9471Chr11:27394096..27394120 (25 bp)
TCTGTACCTGAGTATATTCCCGAAA
LOC_Os11g46080
Os.54361.1.S1_at--328--4691Chr11:27394211..27394235 (25 bp)
GCGGAGGCATGCTTCTGTTGGAAAT
LOC_Os11g46080
Target Sequence 
ACAAAGTGGATGTTCTTCGCGGAAAAAAACCCGAAAAACTCTTCAATGAAGTCGAGTCCGAATCCAGAATCAGCAAAGAT
GGTGAACGGAAAGAGATAGATGATGGTGAACAGAAAGAGAGAGAAGGTCAACAGAAAGAGATAGATGGTGAACAGAAAGA
TATAGTGCGTCCCCGCAGGATCTGGGAAATGTGCAGCGGGCTTCCATTGGCCATTGTCACCATGGCTGGTCACGTGGCCT
GCAACTCAGACAAAGATGAGACACATTGGCTTAATGTCTGTAAATCTCTAGTTCCAGAGTCGGGAAGAGATATGACACAG
GAGGGTGTAACCAGAATACTTGGTCATTGCTACAATGATATGCCTGCCGAGCTGAGGACTTGCTCTCTGTACCTGAGTAT
ATTCCCGAAAGGCAACAAGATTAGCAGGAAGCGGCTGACAAGGCGATGGATAGCTGAAGGCTTTGTCAGTGAGAAGCAGG
GGCAGAGTGTGGAGGATGTTGCGGAGGCATGCTTCTGTTGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis