Browse Element(s) Details


Os.54370.1.S1_at

Description gb:AK103716.1
DB_XREF= gi:32988925
TID=Os.54370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033137P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033137P21, full insert sequence.
FL= gb:AK103716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4875011/11Oxalate oxidase GF-2.8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48720OsAffx.13413.1.S1_at10/113+27717552..27718624hypothetical protein
LOC_Os03g48730OsAffx.13414.1.S1_at11/113+27721532..27721801hypothetical protein
LOC_Os03g48740NANA3+27724513..27727600Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os03g48750Os.54370.1.S1_at11/113+27728273..27729269Oxalate oxidase GF-2.8 precursor, putative, expressed
LOC_Os03g48760NANA3+27733065..27733754Oxalate oxidase GF-2.8 precursor, putative
LOC_Os03g48770Os.12106.1.S1_at1/113+27737404..27738087Oxalate oxidase 2 precursor, putative
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54370.1.S1_at--109--9911Chr03:27728691..27728715 (25 bp)
TACTACTCCAGGGTGGTCCGCGGCG
LOC_Os03g48750
Os.54370.1.S1_at--36--7211Chr03:27728478..27728502 (25 bp)
GTCGTCGAGCTGCTTAAGTCCAAGT
LOC_Os03g48750
Os.54370.1.S1_at--623--1111Chr03:27728462..27728486 (25 bp)
AGTCCAAGTTCACCGGTGGGTACTG
LOC_Os03g48750
Os.54370.1.S1_at--1139--1771Chr03:27728451..27728475 (25 bp)
ACCGGTGGGTACTGATCTGACGATC
LOC_Os03g48750
Os.54370.1.S1_at--1131--8871Chr03:27728434..27728458 (25 bp)
TGACGATCCGAGAGTATTCTTACGC
LOC_Os03g48750
Os.54370.1.S1_at--1075--10191Chr03:27728420..27728444 (25 bp)
TATTCTTACGCGGATCTAGGTCTCT
LOC_Os03g48750
Os.54370.1.S1_at--704--7951Chr03:27728409..27728433 (25 bp)
GGATCTAGGTCTCTGCTACTATAGT
LOC_Os03g48750
Os.54370.1.S1_at--510--4851Chr03:27728395..27728419 (25 bp)
GCTACTATAGTTGTGCGCAGTGTAT
LOC_Os03g48750
Os.54370.1.S1_at--452--6591Chr03:27728363..27728387 (25 bp)
GATTGAATAAACTTGTCGTCGCCAT
LOC_Os03g48750
Os.54370.1.S1_at--66--7251Chr03:27728346..27728370 (25 bp)
GTCGCCATCGCAGGCCACGAATGAA
LOC_Os03g48750
Os.54370.1.S1_at--1082--6871Chr03:27728313..27728337 (25 bp)
GTATTACTACTGCTTTCTTGTGCTT
LOC_Os03g48750
Target Sequence 
TACTACTCCAGGGTGGTCCGCGGCGGCGAGACGTTCGTCATCCCGCGGGGGCTCATGCACTTCCAGTTCAACGTCGGCAA
GACGGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCA
ACCCACCCATCCCGACGCCGGTGCTCGTCAAGGCGCTCCGGGTGGACGCCGGCGTCGTCGAGCTGCTTAAGTCCAAGTTC
ACCGGTGGGTACTGATCTGACGATCCGAGAGTATTCTTACGCGGATCTAGGTCTCTGCTACTATAGTTGTGCGCAGTGTA
TGTTATTTGATTGAATAAACTTGTCGTCGCCATCGCAGGCCACGAATGAAACTAAAATGTATTACTACTGCTTTCTTGTG
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis