Browse Element(s) Details


Os.54378.1.S1_at

Description gb:AK103758.1
DB_XREF= gi:32988967
TID=Os.54378.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143F04, full insert sequence.
FL= gb:AK103758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4906011/11ternary complex factor MIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54378.1.S1_at--84--5551Chr06:29735479..29735503 (25 bp)
GAAACTTCTGGTCCCTAAAATGCTG
LOC_Os06g49060
Os.54378.1.S1_at--365--9831Chr06:29735494..29735518 (25 bp)
TAAAATGCTGCACTGTTTTGCCCGC
LOC_Os06g49060
Os.54378.1.S1_at--130--10711Chr06:29735511..29735535 (25 bp)
TTGCCCGCGGTTTTGTTGACGACAA
LOC_Os06g49060
Os.54378.1.S1_at--735--2471Chr06:29735534..29735558 (25 bp)
AACAGCTTCCCTATCTGGATATCAC
LOC_Os06g49060
Os.54378.1.S1_at--66--8571Chr06:29735549..29735573 (25 bp)
TGGATATCACATTTTCTACCTCAGC
LOC_Os06g49060
Os.54378.1.S1_at--728--1491Chr06:29735592..29735616 (25 bp)
AGCACTGTGTGTCTCAAAGGCGGCA
LOC_Os06g49060
Os.54378.1.S1_at--1149--2291Chr06:29735607..29735631 (25 bp)
AAAGGCGGCAAAGTCTCCTGGGCAC
LOC_Os06g49060
Os.54378.1.S1_at--1158--8271Chr06:29735642..29735666 (25 bp)
GGCATCATTCCGTTTGATTCTAGAT
LOC_Os06g49060
Os.54378.1.S1_at--1151--6551Chr06:29735657..29735681 (25 bp)
GATTCTAGATTTCGGTACCTCTTCT
LOC_Os06g49060
Os.54378.1.S1_at--206--3151Chr06:29735702..29735726 (25 bp)
AATTAACTGCCCTGACATGTTTCCC
LOC_Os06g49060
Os.54378.1.S1_at--72--751Chr06:29736081..29736105 (25 bp)
ATGTCTTAATAGGTTCCCTTGCCTC
LOC_Os06g49060
Target Sequence 
GAAACTTCTGGTCCCTAAAATGCTGCACTGTTTTGCCCGCGGTTTTGTTGACGACAACAGCTTCCCTATCTGGATATCAC
ATTTTCTACCTCAGCAGCAAGCTACTTTTGTTGAGCACTGTGTGTCTCAAAGGCGGCAAAGTCTCCTGGGCACCCGCACA
TTTGGCATCATTCCGTTTGATTCTAGATTTCGGTACCTCTTCTTGCCAGATATGGGATTTTCAAATTAACTGCCCTGACA
TGTTTCCCCATCCAGATAACATAGAAGCCTAACATGAGAAACACAGTGACCAAGTCTCGTGAGCAAACCTATTGGTTACA
GTTGAAACAAGCTTTTGCAGCAAGCAAGTATCTGGATTACAGTATTTCTTAAACAAGCAAATGCACATCCAGTGATCTTG
GAAATGCAGGTTTGGTAAAATTTTGAATCGGTATAAGCACTGGATTAAGATTGACATCTTTGGATGTCAGATGTAAAAAA
AATCTTCAGCATGTCTTAATAGGTTCCCTTGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis